Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02335 ATGGGAGGAACTAAAGTTGCTGTTGCTCCAAAAAGTCGCAAAAAAAGTTTGGATTCAGCAGGAGATTCACGCCAAGACTCCTTTAATAAAGAACACACTTCTAAGATGCTGCTTCGTTTACAAGATCCAAAAGGATTATGTAGTATCAGTACTCATGTCAAAGGAGTTGACCTCAATGTAGGGCTTACTACTGTTGCTTTTGTTCACCCAGAAACAGCCAAAAGATACTCATTCAACATGCTTCAGTTGGTTTTGATAGTACCCAGAGTTTCCAAGGAGAATGTTAATATTTCAAGAATTAATATTATGAAAAAAAGAGGTGGTTCAACTACTAATGAAGTTGAAAATGTAAATATTGACAAGACAGAATATCGACAAGCAATTGCTCAGTTGATGATTTCAGAATCTGTGGGTGAAGGACATGTGATAGTAGCTAAGTCTCTTCGCCTTTATTTGAGAGCTAGCCTACGTTCATGGGTTTATTTGAAGGCATGCAATACTATTTTGGAAAAAAATATTCCTTCAACCTCTCTTTTTCCGTGTCAATTCAAACTACTAAGGCAGGAGAATTCTGTTGAGAAAGATGGTGTAGAAGTTTCTCATGGCCACAATCATCACATTGATAAAAAAGTCCAAGCGAAAGCTACATCAGGTTTCTTTGTGGATACTATAGATTGGTCAATCCAAAATAAAGTTCTAGAAGCTGTCTCTGATGAATCCAATCACAAAGCAGAGGAAGAGACTACAAATCAATCTCAGAATCCAAGGGAATTACAGAGTCTTGTAAGACTATGGTATATCACACAAATTAAGGCAATTACTTCCATTTCAGGTATGGAGGTTAGTTCCTTGATTATGGGTGATAAAACCTTGCTTCATTTTGAAGTAAGCTGTTACAAGCTTGGGAGTAATGGGAAGGCTCAGTTTGCCTATAGTCCTTCAGAGAACAGTGGCAATGCAGCTGAAATGTTGTTTTTATTGACATTTGGTGAAGAATATCTGCATAATGGGAAACTTAGTGCGTATGAAGTTGCTCTTGGTGGAGAACTTGATAACATTAGTATTGTGGACCTGAAGGTTTTTGAAAGGATGAAATTGTGTGATCCTGTGTCTATTGTTTCTATAGAAGAGAGAACCCCTGAAGACCACATTAGTTCAAATCTATCTCCGCTTGGCTGGATGGAGAAAACTGCGGATGATGTTATCAACAGAATGTTGATATTGTTATGTTCTGCATCTGGTTTGTGGTTTGGCACACACAACTTACCACTCCCTGGACATGTTCTCATATATGGACCACCTGGCTCTGGAAAAACTATATTAGCAAGAACTGTGGCAAAATCTCTTGAGAATCGTGAGGACATCTTTGCACACATAATTTTTATTTCCTGCTCTAAACTTGCCCTTGAGAAGGTCCCAGTTATTCGCCAAGAACTTGCAAACCATGTAATTGAAGCTGTAAATCATGCCCCTTCTGTGGTTATCTTTGATGATCTTGATAGCATAATTTCTTCCCCTGACTCTGAAGGATCTCAACAGTCAATATCTGTTGCTGGACTCACAGATTTTCTGGTTGACGTCATGGATGAATATGGGGAGAAGAGGCAAAAGTCATGTGGATTTGGACCAATAGCCTTCATAGCTTCCGTACAATCACTAGAGAAGATACCACAATCTTTAAGCTCTTCAGGAAGATTTGACTTTCACATAAAGTTGCCTGCTCCTGCAGCCTCTGAGCGCAGGGCTATGTTGAAGCATGAAATACAGAGGCGTCACTTGCAGTGCAATGATGACATCCTGCTTGACGTGGCTGTAAAATGTGATGGTTATGATGGTTATGATCTGGAAATATTAGTTGACAGAGCTGTTCATTCTGCTGTTCGCCGTTTTCTGCCTTCTAATGCTTCCATTGATGTACATGAGAGTCCAGCTATACTAAGGGAGGATTTCTCTCAGGCAATGCTTGATTTTCTTCCAGTTGCAATGCGTGATATCACAAAATCAGCTTCTGATGATGGCCGTTCTGGATGGAATGATGTGGGTGGTCTTGTTGACATTCGAAATGCTATTAAGGAGATGATAGAGCTGCCATCAAAGTTTCCAAAAATTTTTGCACAAGCACCTTTGAGGTTGCGGTCAAATGTCCTTTTATATGGTCCTCCTGGTTGTGGCAAAACTCACATAGTTGGTGCTGCTGCTGCTGCTTCTTCACTTCGATTCATATCAGTAAAAGGGCCAGAGCTGTTAAACAAATACATTGGTGCTTCTGAACAAGCTGTTAGGGATATTTTCTCTAAAGCAGCAGCTGCAGCACCATGTCTACTTTTTTTTGATGAATTTGATTCCATTGCCCCCAAGAGAGGGCATGACAATACTGGAGTAACTGATCGAGTTGTGAATCAATTTTTGACCGAGTTAGATGGTGTGGAGATTTTAACTGGTGTATTTGTGTTTGCTGCAACAAGTAGACCAGATTTACTTGATGCTGCACTGTTGAGACCTGGTAGGTTAGATCGTCTTCTATTCTGTGACTTTCCATCTTGGCACGAGAGATTGGAAATTCTTGCTGTACTTTCTAGAAAGTTGGCAATGGACAAGGATATTGATTTGACTACAATAGCTAATATGACTGAGGGATTCAGTGGAGCTGATCTCCAAGCTCTCCTCTCAGATGCGCAGCTTGCAGCAGTTCATGATGTTCTGGACAATGAGGATGGTTTAAGGACGGAAAAAACACCCATTATTACCGATGCTCTTCTAAAGTTCACAACATCCAAGGCTAGACCATCTGTTTCAGAAGAAGAAAAGAGAAGACTCTACAATATATATCACCAGTTCCTGGATTCAAAAAGATCTGTTGCTGCCCAGTCAAGAGATTCGAAAGGAAAGAAGGCAACTTTAGCTTGA 2907 0.4014 MGGTKVAVAPKSRKKSLDSAGDSRQDSFNKEHTSKMLLRLQDPKGLCSISTHVKGVDLNVGLTTVAFVHPETAKRYSFNMLQLVLIVPRVSKENVNISRINIMKKRGGSTTNEVENVNIDKTEYRQAIAQLMISESVGEGHVIVAKSLRLYLRASLRSWVYLKACNTILEKNIPSTSLFPCQFKLLRQENSVEKDGVEVSHGHNHHIDKKVQAKATSGFFVDTIDWSIQNKVLEAVSDESNHKAEEETTNQSQNPRELQSLVRLWYITQIKAITSISGMEVSSLIMGDKTLLHFEVSCYKLGSNGKAQFAYSPSENSGNAAEMLFLLTFGEEYLHNGKLSAYEVALGGELDNISIVDLKVFERMKLCDPVSIVSIEERTPEDHISSNLSPLGWMEKTADDVINRMLILLCSASGLWFGTHNLPLPGHVLIYGPPGSGKTILARTVAKSLENREDIFAHIIFISCSKLALEKVPVIRQELANHVIEAVNHAPSVVIFDDLDSIISSPDSEGSQQSISVAGLTDFLVDVMDEYGEKRQKSCGFGPIAFIASVQSLEKIPQSLSSSGRFDFHIKLPAPAASERRAMLKHEIQRRHLQCNDDILLDVAVKCDGYDGYDLEILVDRAVHSAVRRFLPSNASIDVHESPAILREDFSQAMLDFLPVAMRDITKSASDDGRSGWNDVGGLVDIRNAIKEMIELPSKFPKIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWHERLEILAVLSRKLAMDKDIDLTTIANMTEGFSGADLQALLSDAQLAAVHDVLDNEDGLRTEKTPIITDALLKFTTSKARPSVSEEEKRRLYNIYHQFLDSKRSVAAQSRDSKGKKATLA 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02335 968 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 677 941 IPR027417 -
Vian1g02335 968 FunFam Peroxisome biogenesis protein 1 381 575 - -
Vian1g02335 968 Gene3D - 676 938 IPR027417 -
Vian1g02335 968 MobiDBLite consensus disorder prediction 1 29 - -
Vian1g02335 968 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 406 653 IPR027417 -
Vian1g02335 968 ProSitePatterns AAA-protein family signature. 815 833 IPR003960 GO:0005524|GO:0016887
Vian1g02335 968 SMART AAA_5 424 576 IPR003593 GO:0016887
Vian1g02335 968 SMART AAA_5 711 847 IPR003593 GO:0016887
Vian1g02335 968 Gene3D - 576 655 - -
Vian1g02335 968 FunFam PeRoXisome assembly factor 846 922 - -
Vian1g02335 968 Gene3D - 846 925 - -
Vian1g02335 968 PANTHER AAA-FAMILY ATPASE 71 943 - -
Vian1g02335 968 Gene3D - 374 575 IPR027417 -
Vian1g02335 968 FunFam Nuclear valosin-containing protein-like 673 851 - -
Vian1g02335 968 Pfam ATPase family associated with various cellular activities (AAA) 428 573 IPR003959 GO:0005524|GO:0016887
Vian1g02335 968 Pfam ATPase family associated with various cellular activities (AAA) 715 842 IPR003959 GO:0005524|GO:0016887
Vian1g02335 968 CDD RecA-like_PEX1_r2 686 843 - -
Vian1g02335 968 MobiDBLite consensus disorder prediction 11 29 - -
Vian1g02335 968 Pfam AAA+ lid domain 867 902 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02335 Vian-Chr1 30153736 30186877 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02335 709 914 Calmodulin-binding Proteins AT3G56690 39.048 2.40e-37 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02335 K13338 - gmx:100803882 1637.85