Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02333 ATGAAAGATGGAGGTAGGAAGCAGGGTGCACCCTCACCCTGTGCTGCATGCAAGCTCCTTAGGAGAAGGTGTGCTCAGGATTGTGTTTTTGCTCCTTATTTTCCTGCTGATGAACCCCACAAGTTTGCCAATGTTCACAGAGTCTTTGGTGCCAGCAATGTCAATAAGATGCTTCAGGAGTTACCAGAGCATCAGAGAGGAGATGCAGTGAGCAGCATGGTGTATGAGGCAAATGCAAGAGTGAGGGACCCTGTGTATGGGTGTGTGGGGGCCATTTCATCTCTTCAGCAACAGATTGATGTGTTGCAGACCCAATTGGCAGTGGCTCAAGCCGAAGCAGTGCATCTCAGAGTGCGTCAGAATGCATCTCTCTACAGCCCCACTAGCCCTACCAACACTGCTTCTCCATCTTCCAAGATCATTCACTCACAACCCAAACCTATTTTTGACATCGACATGGACATGGTCGTCGACCACACCACCTACACTGATTCAATCTGGTGA 504 0.494 MKDGGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPHKFANVHRVFGASNVNKMLQELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQNASLYSPTSPTNTASPSSKIIHSQPKPIFDIDMDMVVDHTTYTDSIW 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02333 167 Coils Coil 92 112 - -
Vian1g02333 167 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Vian1g02333 167 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Vian1g02333 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02333 Vian-Chr1 30135440 30137771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02333 1 167 AS2 family AT1G31320 69.767 1.07e-72 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vian1g02333 LOB 5.9e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02333 - - vum:124847068 314.694