Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02329 ATGGAAAGAGGCAGAGGCAGTTACGGTGGCCGTAGCAGTTACCGCGGCCGTGGCAGTTACCACGGTCGTGACAGTTACCACGGTCGTGACAGTGGCACTTACCACGGCCGTGAGAGTGGCAGTTATGGTATCGAGGAAAAAGCAGAGAGCATCAGACCAATGCGTAGGCCTGACAAAGGGGGAAAAATGGCAGCTAAGAGAAACACCCTTGAGGTGAATTATTTCCTTGTTCAGTTTGATGAAAAGAGAGTAATATTCCACTACAATGTGGATGTGAAGGCCAAGGCTCCATCCATGAACAACCGGCCTCAGAAGATTTCCAAGTTTCTTCTGTCGTCGATTCGGGATAAGCTGTTCTCCGATCACGCGTTCCCGACTTCGGCGTACGACGGCGACAAGAGCATATTCAGCTCGGAGCGCTTGAAGGAAGGAACCTTCGATGTGGAGGTGGTGAAAGGTGGGGAAGCAAGAATGCTTTGGTATTCGGTCACTCTTACACTTGTGAAGGACCTTGAACTCCGCAAGTTGAGAGATTACTTGAGTGGAAAGGTTCTTGGAACTCCTGCAGATGTTTTACAGGGCTTGAATTTGGTGGCGAAGGAGAATCCCAGTAAGCAGTGTGATACGGTTGGGTGCTGCTTCTTCCCCAAGGATCATCCCATAAGTCCGGAAGACTCTAAAGGGATAATTGCAACTGGAGGGTTTCAGCAGAGTCTTAAAACCAGTTCTCAGGGCTTGTCCTTGTGCGTCGACTTTTCCGTTCTGTCGTATTTTGGGGAGGAGAAACCGGTGTTGAAGTTTCTGCACGAACAGATTGAGAATTTCGATTTGAGGATGTTTCCCAAGTTCAAGAAAAAAGTTGAGGATTTACTTGTCGGGTTGAAAGTTAATGTAACCCACCGGAAGACGAAGCAGAAATACACTATCACAAAGTTGACACCCATGGTTACGAGCAAGATCAGATTCCCTGTGTTGGACAGTGAGGGGCGGAATCCAGCAGGGGAATGTGGTGTTATGGAGAGTTTTGGCATGCGTGTGGACACTTCCATGACAAAAGTGACAGGACGCGTAATTCAGCCCCCAGAATTGAAGATAGCTAATCGAAAGGGTGGGATTATTAGAATGACACTGGAAGTGGGGAAACCTCAGTGGAGTCTGAAGGGAGGATCAATGGTGGAAGGCAAGCCGTTAAAGTGTTGGGGCATTATTTATTTTTCTGATTCCAAGTGCCAATTTAAAAGCGAACAGTTCATTAACAATCTTCGTAAGAAGTGCGGATTACTCGGCATTAGAATGGAGAAGCCAGCTTGTTCTCAAGAATTTCCTATGTCGACTCTTCGCAAATACGATTCGCTGTGTGAGGTACTTCAAAAAATTGATTACCAGGTTCAAAAGGAACGTGAACAACGGCTGCAGATTCTTCTTTGTGTGATGGCCGATAAAGATTCAGGTTACAAGAGCCTAAAGTTGATCGCCGAGACCAAGGTTGGGGTGGTGACACAATGCTGCTTACGTTGTCACGCTAATGATTCGAAGGATCACTTCCTTACAAATCTTGCCCTCAAGATGAATGCAAAAATTGGAGGAAGTAATGTAGAGCTCATGAATAAGCTACCAAACTTTGACGGCGAAGGTCATGTTATGTTCATAGGAGCTGATGTTAATCATCCACCTTCCAGGGACACCAACAGTCCATCAATTGCTGCTGTAGTTGCCACTGTTAATTGGCCTGCTGCAAATCGCTATGCTGCACGTGTTTGTGCTCAAGGTCACCGGGTTGAAAAAATTTTGAATTTTGGAAGAAGTTGCCTTGAACTAGTTTCTTATTACAATAAGCTGAACAACGTGTGGCCAGAAAAAATTGTTATCTTTCGAGATGGCGTGAGCGAAAGTCAATTTAACATGGTTCTGACGGAAGAGCTGCAAGATTTGAAATCAGTGTTTGGTGACTCAAATCACTCGCCAACCATCACTCTTATTGTTGCACAAAAGCGACATCAAACTCGATTTTTTGTGAAGGGTAAAAGTTTCAATGTGCTACCCGGAACAGTTATAGACACAGAGGTGGTACATCCTTATGAATTTGACTTCTACCTTTTTAGTCACAAAGGGATATCGGGTACAAGCAAGCCCACTCATTATCATGTGTTATGGGATGAACACAAATTTACATCTGATGATTTGCAGAAACTTATATACGAAATGTGCTTTACCTTTGCAAAGTGCACTGGACCAGTATCTTTGGTTCCTCCAGTGTACTATGCTGATCTAGCTGCATACAGAGGCCGGGTATACTATGAAGCAATCAATGAAGCCAAATCTGATCGCTCTGCCACTACTGGATCTTCTTCCTCAGTTTCTGCTTTAAATGATGAAGGCTGTTACAAGTTGCACCCTGACGTCGAAAACCTTATGTTCTTCATTTGA 2427 0.4487 MERGRGSYGGRSSYRGRGSYHGRDSYHGRDSGTYHGRESGSYGIEEKAESIRPMRRPDKGGKMAAKRNTLEVNYFLVQFDEKRVIFHYNVDVKAKAPSMNNRPQKISKFLLSSIRDKLFSDHAFPTSAYDGDKSIFSSERLKEGTFDVEVVKGGEARMLWYSVTLTLVKDLELRKLRDYLSGKVLGTPADVLQGLNLVAKENPSKQCDTVGCCFFPKDHPISPEDSKGIIATGGFQQSLKTSSQGLSLCVDFSVLSYFGEEKPVLKFLHEQIENFDLRMFPKFKKKVEDLLVGLKVNVTHRKTKQKYTITKLTPMVTSKIRFPVLDSEGRNPAGECGVMESFGMRVDTSMTKVTGRVIQPPELKIANRKGGIIRMTLEVGKPQWSLKGGSMVEGKPLKCWGIIYFSDSKCQFKSEQFINNLRKKCGLLGIRMEKPACSQEFPMSTLRKYDSLCEVLQKIDYQVQKEREQRLQILLCVMADKDSGYKSLKLIAETKVGVVTQCCLRCHANDSKDHFLTNLALKMNAKIGGSNVELMNKLPNFDGEGHVMFIGADVNHPPSRDTNSPSIAAVVATVNWPAANRYAARVCAQGHRVEKILNFGRSCLELVSYYNKLNNVWPEKIVIFRDGVSESQFNMVLTEELQDLKSVFGDSNHSPTITLIVAQKRHQTRFFVKGKSFNVLPGTVIDTEVVHPYEFDFYLFSHKGISGTSKPTHYHVLWDEHKFTSDDLQKLIYEMCFTFAKCTGPVSLVPPVYYADLAAYRGRVYYEAINEAKSDRSATTGSSSSVSALNDEGCYKLHPDVENLMFFI 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02329 808 Pfam Argonaute linker 1 domain 210 253 IPR014811 -
Vian1g02329 808 CDD Piwi_ago-like 338 766 IPR045246 -
Vian1g02329 808 SUPERFAMILY PAZ domain 126 319 IPR036085 GO:0005515
Vian1g02329 808 Gene3D - 543 808 IPR036397 GO:0003676
Vian1g02329 808 Pfam Piwi domain 474 766 IPR003165 GO:0003676
Vian1g02329 808 MobiDBLite consensus disorder prediction 17 62 - -
Vian1g02329 808 ProSiteProfiles Piwi domain profile. 473 767 IPR003165 GO:0003676
Vian1g02329 808 Gene3D paz domain 256 352 - -
Vian1g02329 808 Gene3D - 357 535 - -
Vian1g02329 808 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 338 771 - -
Vian1g02329 808 SMART Piwi_a_2 473 767 IPR003165 GO:0003676
Vian1g02329 808 MobiDBLite consensus disorder prediction 1 62 - -
Vian1g02329 808 SUPERFAMILY Ribonuclease H-like 459 768 IPR012337 -
Vian1g02329 808 Pfam N-terminal domain of argonaute 69 198 IPR032474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02329 Vian-Chr1 30007051 30010302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02329 340 807 Eukaryotic Initiation Factors Gene Family AT5G43810 36.000 1.93e-92 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02329 K11593 - gmx:100805250 671.774