Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02311 ATGCTAGGTAGAGATAGCAAAAGTAGCAGCAGACTTAGACAATCATCATGCTCATGTCCACCCAGAATGGTTAAAATTTCAGCTGAGCCTTCATCATCTTCTTCTTCTTCTTCTTCTTCTTTCTCTTCTACAGCACGGCTTAAAAGACACGATGTTTTCATCAGTTTTAGAGGTGAGGACACGCGCAACAGCTTCACAAGCCATCTCTATGCAGCCTTTCAGCACAAGAACATCCAAGCCTTCATAGATAACAGGTTTCACAAAGGGGATATGATCTCTTCCTCTATTTTTGAAGCCATCAAACACTCCAACGTTTCTCTTGTTGTTCTCTCCAAGTACTATGCTTCCTCCACGTGGTGTTTGCGTGAACTCGCCAAAATACTTCAACTCAGGAAACGTGGAGAACACATTGTGATACCTGTTTTCTATAAGATTGACCCTTCCCATGTAAGGAAGCAGACAGGAACTTACGGAATGGCGTTTCAAAAATATAAAGAAGATGTCAAACAAAACATGGCCATGTTGCAGAAATGGAAAGCTGCTCTCACTGAAGTGGCAGATATAGTTGGGTGGGAATCAAAGAATTTTAGGACGGAGAATGAACTCATTCAGGAAATTGTCAAAGACGTTATGCAAAAACTAAACCATATGTATCCCACTGAAGTAAAAACACTTGTTGGAATTGATCAAAATCTTGCTCCTATTGAATCATTATTAAGACTAAGGTCAAAAGAAGTTCGCATAATTGGAATTTGGGGAATGGGTGGACTAGGTAAGACAACCATTGCGAGAGCTTTATTTGACAAATTATCATCTCAATTTGAAGCTAGTTGCTTCTTGGCAAATGTAATGGCAGAACATGAAAAGCAAGGACTTGATTATTTGCGCAATAAACTTCTTTCTGAGATATTAGAAGATGTGAATCCCCGTATAAGCACTTCCAAAGTGAGATCTACGTTTGTTATGAAGAGGCTTAGACAGAAAAAGGTTTTGATAGTACTTGATGATGTGGACGATCCAAAGAAACTCGAAGATCTTGCTGCACAACATGATTGCTTGGGATCTGGGAGTAGGGTCATTGTCACTACAAGAGACAAGCATGTCCTTAGCAAAGGGGTAGATGCAATCTATGAGGTTAAGGGATTGTCCCTTGATCATGCTGTTAGGCTTTTTAGTTTAAAGGCCTTCGGGAAAACTTATCCTGAAAGGGGCTTTGAAATGCTGTCTAAACAGGCAGTTGATCATGCAAATGGAAATCCATTGGCTTTAAAAGTTTTAGGTTCAGTTCTCCATTCCAGAAATGAGCAGCAATGGGACAATGCTATGAGAAAATTCAAGAAGGTTCCTAATGCTGAAATTCAGAATGTCTTGAGATGGAGTTATGATGGATTAGATTATGAACAAAAGAACATGTTCCTGGACATTGCATGCTTTTTCCGAGGAGAAAATAAAGAAAATGTTATAAGGTTGCTCGACATTTGTGGTTTCTATGCATATATTGGTATAAAAATCCTTCTAGAAAAAGGTCTTATTACTTTTTCTGATGATGGTGACGTGTGTATGCATGAATTGATACAGGAAATGGGTTGGGAAATTGTTCATCAGGAATCTATCAAAGATCCTGGAAGTCGCAGCCGACTGTGGGATCTTAAAGAAGTCTATGATGTGTTGAAAAATAACAGGGGAACTGAAGCAGTTGAAGGCATAATCTTAGATGTGTCTCAAATAAGAGTCCTGCTGCTGAGCTGTGAGACTTTCTCAAGGATGATAAATATGAGATTTCTCAAATTCTATATGGGGAAGGGTAGAAAATGCAATTTGCATCTTCCTTCAGGTCTCCAATCCTTGCCTAATAAATTAATGTACCTACAATGGGATGGATACCCTTCCAAGTCTCTGCCATCAACTTTTTGTCCTGAGAACCTTGTTGTGCTTTCCATGATGGAAAGCCACGTTGAGAAACTTTGGGATGGAACCAAGGTAATTTATTTCACTTTTCAACCGGTCAAGTTGCATGATTGTGCTACTAAAGAACTTTTTACTCTTTGCTGCTGCAGTGTCTTCCAAGCTTGA 2073 0.3932 MLGRDSKSSSRLRQSSCSCPPRMVKISAEPSSSSSSSSSSFSSTARLKRHDVFISFRGEDTRNSFTSHLYAAFQHKNIQAFIDNRFHKGDMISSSIFEAIKHSNVSLVVLSKYYASSTWCLRELAKILQLRKRGEHIVIPVFYKIDPSHVRKQTGTYGMAFQKYKEDVKQNMAMLQKWKAALTEVADIVGWESKNFRTENELIQEIVKDVMQKLNHMYPTEVKTLVGIDQNLAPIESLLRLRSKEVRIIGIWGMGGLGKTTIARALFDKLSSQFEASCFLANVMAEHEKQGLDYLRNKLLSEILEDVNPRISTSKVRSTFVMKRLRQKKVLIVLDDVDDPKKLEDLAAQHDCLGSGSRVIVTTRDKHVLSKGVDAIYEVKGLSLDHAVRLFSLKAFGKTYPERGFEMLSKQAVDHANGNPLALKVLGSVLHSRNEQQWDNAMRKFKKVPNAEIQNVLRWSYDGLDYEQKNMFLDIACFFRGENKENVIRLLDICGFYAYIGIKILLEKGLITFSDDGDVCMHELIQEMGWEIVHQESIKDPGSRSRLWDLKEVYDVLKNNRGTEAVEGIILDVSQIRVLLLSCETFSRMINMRFLKFYMGKGRKCNLHLPSGLQSLPNKLMYLQWDGYPSKSLPSTFCPENLVVLSMMESHVEKLWDGTKVIYFTFQPVKLHDCATKELFTLCCCSVFQA 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02311 690 Pfam TIR domain 50 225 IPR000157 GO:0007165
Vian1g02311 690 PRINTS Disease resistance protein signature 324 338 - -
Vian1g02311 690 PRINTS Disease resistance protein signature 248 263 - -
Vian1g02311 690 PRINTS Disease resistance protein signature 416 430 - -
Vian1g02311 690 Gene3D - 382 465 IPR042197 -
Vian1g02311 690 SMART till_3 49 188 IPR000157 GO:0007165
Vian1g02311 690 Gene3D - 47 211 IPR035897 -
Vian1g02311 690 ProSiteProfiles TIR domain profile. 48 214 IPR000157 GO:0007165
Vian1g02311 690 Pfam NB-ARC domain 238 451 IPR002182 GO:0043531
Vian1g02311 690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 475 IPR027417 -
Vian1g02311 690 MobiDBLite consensus disorder prediction 1 41 - -
Vian1g02311 690 MobiDBLite consensus disorder prediction 7 41 - -
Vian1g02311 690 Pfam Leucine Rich Repeat 641 660 IPR011713 -
Vian1g02311 690 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 50 674 IPR044974 GO:0006952
Vian1g02311 690 FunFam Disease resistance protein (TIR-NBS-LRR class) 46 216 - -
Vian1g02311 690 Gene3D - 212 376 IPR027417 -
Vian1g02311 690 SUPERFAMILY "Winged helix" DNA-binding domain 452 558 IPR036390 -
Vian1g02311 690 SUPERFAMILY Toll/Interleukin receptor TIR domain 45 191 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02311 Vian-Chr1 29588425 29590963 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02311 41 665 WRKY Transcription Factor Family AT4G12020 35.238 1.02e-103 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02311 - - gmx:100797269 1045.42