Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02291 ATGGAGAACATTCTGGGTCTTATCAAACTTCGTATCAAAAAAGGCTCTAATCTCAAAGCTTGCGACACTCGTACCAGTGACCCTTATGTCTTTGTCACCATGGCCGAACAGCAACTGAGAACTAGTGTTGCAAAAGATACCTTAAATCCTGAGTGGAATGAAGAACTGACCCTTTATGTAAAAGATGTTAACATTCCAATACTTGTGACAGTTACAGACAAAGACACTTTCACACCAGATGACAACATGGGAGATGCAGAAATAGACTTAAAGCCATATCTTCAGTGTGTGAAGATGGAGTTAAGAGATCTGGCAGAGGGTCACATAGTGAAGCAGATTCAACCAGATAGGACTAACTGCCTTGCTGAAGACAGCAACTGCATATGGAAAAATGATAAACTCATCCAAGAGATGACTTTAAGATTGAGAAATGTCAAGCATGGGGAAATAACTGTAGAAATTGGGTGGGTTACTCTTCCAGATTCAAAAGGCTTATCACAAGTTCAGTTTTAG 513 0.3996 MENILGLIKLRIKKGSNLKACDTRTSDPYVFVTMAEQQLRTSVAKDTLNPEWNEELTLYVKDVNIPILVTVTDKDTFTPDDNMGDAEIDLKPYLQCVKMELRDLAEGHIVKQIQPDRTNCLAEDSNCIWKNDKLIQEMTLRLRNVKHGEITVEIGWVTLPDSKGLSQVQF 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02291 170 SMART C2_3c 7 102 IPR000008 -
Vian1g02291 170 Gene3D C2 domain 4 168 IPR035892 -
Vian1g02291 170 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 91 IPR035892 -
Vian1g02291 170 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Vian1g02291 170 Pfam C2 domain 7 92 IPR000008 -
Vian1g02291 170 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 3 163 IPR044562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02291 Vian-Chr1 29230026 29231332 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02291 38 167 C2H2 Transcription Factor Family AT1G70790 51.515 2.01e-43 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02291 - - pvu:PHAVU_002G096400g 311.612