Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02285 ATGTCGGATTCTTATGCTAGTACCTTTCACTCTCCCACTCCAAACGTCACCCATGCAACCCCCAAAATCACCACATTGTGCTCAATAGCTCAACCTTATTGTATTTGCACTCACTGTAACCACATCCTCTCCTTCAACCACCATGTTGGTAATGCAGCAGAGGAAGGGACAAATAACACAGGGTCCCATGTTCAGTCCCAGCAAAGCACAAGGTGGAGTCCAACGCCAGTTCAGTTACTGGTCCTTGAGGAATTGTATAGGCAAGGCACTAAAACACCATCAGCTGAACAGATTCAGCAAATAGCTTCACAGTTGCGGCAGTTTGGGAAGATTGAAGGGAAGAACGTGTTCTACTGGTTCCAGAATCACAAGGCGAGAGAGAGACAGAAGAGGCGCCGCAGGGAGATGGAGGAAAATAATGCTGCTTCTTCTAGCGAAGGGTTGAAAGAGACAGGTTGTGGAGTTAAAGAGACAAAGAAGTGGGCATCCACTTCAAACTGCAGTCGACATGCAGAGGAATCTGCCGCACTGGATATAGCAGAAAAGGGCTCTAATGGGTGGACTCAGTTTGAGGAGAGAGGCATACAAGTTTTGAGGAGAAACATATCAGAAAGAAGGTTGCAATTGCAAGATAACATGGAAATGCCTTGTTTCCCTCCCACTACTATGGCAGCTCTCGCAACCTCACACAGAACACTTAGCACACAACTTTTAATCCCTCAAAGTTATAACAGAGAAAGTTTAAACTACTATGATGGAGAAAATGCAGATCCTCGAACCCTCGACCTATTTCCACATAAGAATGATGACCAAGATGGCATTTGTCTTGCTGAGAGGAAATCCATGTTCTGTGCCAGTGCTTCTATGGACACTGATATCACCTCCAGCCAGTTTTTTGAGTTTCTTCCTTTAAGAAACTGA 921 0.4517 MSDSYASTFHSPTPNVTHATPKITTLCSIAQPYCICTHCNHILSFNHHVGNAAEEGTNNTGSHVQSQQSTRWSPTPVQLLVLEELYRQGTKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQKRRRREMEENNAASSSEGLKETGCGVKETKKWASTSNCSRHAEESAALDIAEKGSNGWTQFEERGIQVLRRNISERRLQLQDNMEMPCFPPTTMAALATSHRTLSTQLLIPQSYNRESLNYYDGENADPRTLDLFPHKNDDQDGICLAERKSMFCASASMDTDITSSQFFEFLPLRN 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02285 306 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 53 300 IPR044555 GO:0003700|GO:0099402
Vian1g02285 306 SMART HOX_1 67 134 IPR001356 GO:0003677
Vian1g02285 306 ProSiteProfiles 'Homeobox' domain profile. 65 130 IPR001356 GO:0003677
Vian1g02285 306 MobiDBLite consensus disorder prediction 127 151 - -
Vian1g02285 306 SUPERFAMILY Homeodomain-like 63 133 IPR009057 -
Vian1g02285 306 Coils Coil 126 146 - -
Vian1g02285 306 Pfam Homeodomain 69 129 IPR001356 GO:0003677
Vian1g02285 306 Gene3D - 53 144 - -
Vian1g02285 306 CDD homeodomain 70 125 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02285 Vian-Chr1 28983222 28985167 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02285 58 306 Wox Gene Family AT3G18010 33.115 3.18e-36 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vian1g02285 Homeodomain 3.7e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02285 - - vum:124827065 494.967