Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02282 ATGGCAAAGCGTTTGATTCCCACCTTCAATCGCATTCTCGTAGAGAAAATTGTTCCTCCTTCCAAGACCAGCGCTGGCATTCTTCTCCCTGAGAAGTCCTCCCAGCTTAATTCCGGTAAGGTGATAGCGGTTGGTCCCGGATCACGAGACAAGGCAGGGAACTTCATCCCGGTGTCCGTCAAGGAAGGGGACCGTGTTCTCTTGCCTGAGTACGGTGGCACGCAAATCAAGCTCGACGACAAAGAGTTCCATTTGTTTAGGGATGAGGACATATTGGGCATTCTGCATGAATGA 294 0.5068 MAKRLIPTFNRILVEKIVPPSKTSAGILLPEKSSQLNSGKVIAVGPGSRDKAGNFIPVSVKEGDRVLLPEYGGTQIKLDDKEFHLFRDEDILGILHE 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02282 97 SUPERFAMILY GroES-like 3 96 IPR011032 -
Vian1g02282 97 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 94 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vian1g02282 97 Pfam Chaperonin 10 Kd subunit 5 94 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vian1g02282 97 FunFam 10 kDa chaperonin, mitochondrial 1 97 - -
Vian1g02282 97 SMART Cpn10_2 4 95 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vian1g02282 97 CDD cpn10 4 95 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vian1g02282 97 Gene3D GroES chaperonin 1 97 IPR037124 GO:0006457
Vian1g02282 97 PRINTS 10kDa chaperonin signature 61 73 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vian1g02282 97 PRINTS 10kDa chaperonin signature 82 95 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vian1g02282 97 PRINTS 10kDa chaperonin signature 26 47 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vian1g02282 97 PRINTS 10kDa chaperonin signature 5 20 IPR020818 GO:0005524|GO:0006457|GO:0044183
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02282 Vian-Chr1 28950028 28950506 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02282 3 96 Calmodulin-binding Proteins AT5G20720 36.458 1.92e-11 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02282 K04078 - gmx:100527505 184.496