Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02280 ATGGACCCTAATGAAGTGCAGCATTCTCATTGCCTAGAGATGACCATGGAAGTGCACCAAGTTCTTCCACCACCCCACAAGACCACTCTCCACAAACTCAACAACAGGCTCAAGGAAACCTTTTTCCCTGATGACCCTCTTCGCCAATTCAAAGGCCAACCACTAAAGACAAAGCTAATTCTTGCTGCTCAATATCTCTTCCCTATTCTTCAATGGGGTCCTAAGTACACCTTCAAACTCTTCAAGTCTGACCTTGTTTCTGGCCTCACTATTGCTAGCTTGGCTATCCCACAGGGAATCAGTTATGCTAAGCTTGCAAATCTTCCTCCGATTGTGGGACTATTGGTCATGGCAAACGATACTGATGGGGATTTGCTTTCTAGTGCTACTACTATTAGCAAGACACGTTTTTTTGCAATTAAGGCTCAAAACCATGGCATTAGTGTGATCGGCAAATTGCAACAAGGGATAAATCCTCCTTCATGGAATATGTTGCGCTTTCATGGAAGTCACTTAGGCCTAGTTATGAAAACAGGGCTTATCACTGGCATTTTGTCTCTCACTGAAGGTATTGCAGTAGGAAGAACATTTGCAGCTTTGAAAAACTACAAAGTTGATGGAAACAAGGAAATGATGGCAATTGGGTTTATGAATGTGGTTGGCTCCTCCACTTCCTGTTATGTTACAACAGGTGCTTTCTCTCGGACAGCTGTTAACAACAACTCAGGAGCAAAAACAGCTGTGTCAAATGTTGTTATGTCTGTCACAGTCATGGTGACACTCCTTTTTCTGATGCCATTGTTCCAATACACACCCAATGTTGTGTTGGGTGCAATCATAGTCACTGCAGTGATTGGCCTCATTGATCTCCCTGCTGCTTATAACATTTGGAAGATAGACAAATTCGATTTCCTTGTCATGTTGGCTGCTTTCATGGGTGTTCTTTTCATCTCTGTCCAAGGAGGCCTTGCTCTTGCTGTTGGATTATCAACTTTCAAGATACTGATGCAAATTACAAGGCCAAAAACAGTAATGTTGGGGAAGATTCCAGGAACAAACATATACAGAAATCTTCATCAGTACAAGGAAGCTGTGAGAGTACCTGGTTTTCTTATTTTAAGCATTGAGGCTCCCATCAATTTTGCTAACATAACATATCTTAACGAGAGAACATTACGATGGGTAGAAGAAGAGGAAGACAACATAAAAGAACAATCAAGCCTTCGATTCTTGATATTGGAAATGTCTGCTGTGAGTGCCATTGATACAAGCGGAATCTCACTTTTCAAAGAGTTGAAATCAACCTTAGAAAAGAAGGGTGTTGAGCTTGTGTTGGTGAATCCCCTCGCTGAGGTCATTGAGAAGCTGAAAAAAGTTGATGAAGCTAGTGATTTCAGGCATGCAGATAGCCTTTTCTTGACGGTTGGAGAGGCTGTAGCTTCACTTTCATCAACAATGAAGAGTCAATCACCAGCTATTCTTGGAGGGGCACACACAATTGTGTAA 1506 0.4203 MDPNEVQHSHCLEMTMEVHQVLPPPHKTTLHKLNNRLKETFFPDDPLRQFKGQPLKTKLILAAQYLFPILQWGPKYTFKLFKSDLVSGLTIASLAIPQGISYAKLANLPPIVGLLVMANDTDGDLLSSATTISKTRFFAIKAQNHGISVIGKLQQGINPPSWNMLRFHGSHLGLVMKTGLITGILSLTEGIAVGRTFAALKNYKVDGNKEMMAIGFMNVVGSSTSCYVTTGAFSRTAVNNNSGAKTAVSNVVMSVTVMVTLLFLMPLFQYTPNVVLGAIIVTAVIGLIDLPAAYNIWKIDKFDFLVMLAAFMGVLFISVQGGLALAVGLSTFKILMQITRPKTVMLGKIPGTNIYRNLHQYKEAVRVPGFLILSIEAPINFANITYLNERTLRWVEEEEDNIKEQSSLRFLILEMSAVSAIDTSGISLFKELKSTLEKKGVELVLVNPLAEVIEKLKKVDEASDFRHADSLFLTVGEAVASLSSTMKSQSPAILGGAHTIV 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02280 501 SUPERFAMILY SpoIIaa-like 366 482 IPR036513 -
Vian1g02280 501 Gene3D STAS domain 340 485 IPR036513 -
Vian1g02280 501 ProSiteProfiles STAS domain profile. 360 482 IPR002645 -
Vian1g02280 501 PANTHER SULFATE TRANSPORTER 30 116 IPR001902 GO:0016020|GO:0055085
Vian1g02280 501 FunFam Sulfate transporter 31 340 485 - -
Vian1g02280 501 Pfam STAS domain 361 478 IPR002645 -
Vian1g02280 501 CDD STAS_SulP_like_sulfate_transporter 361 460 - -
Vian1g02280 501 Pfam Sulfate permease family 81 115 IPR011547 GO:0016020
Vian1g02280 501 Pfam Sulfate permease family 140 309 IPR011547 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02280 Vian-Chr1 28873558 28881662 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02280 132 483 Inorganic Solute Cotransporters AT1G23090 75.141 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02280 K17471 - gmx:100819130 624.78