Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02277 ATGGATGATGAAGTTGTTCAGCGAGTGTTCCATGAAGGAGGACGCGATTACTTCCAACAACAGCCTTCGACTTCTTCGTCTTCGTCTTCCATCCTCCAATCTCTCCCTCTCCATGTGAATTTTGAAGTTTGTATGGTATTGCTATTCATGTATGTTGAAGCTTTTTTGCGTGCTCAATTTTTCATGATTCATGAGATTTGTGAACTCCGAGAGAAAAAGGATGGCCTTGTTACTGTTGGCATTGGTGGTCCAAGTGGATCTGGTAAAACAAGCTTAGCAGAAAAGGTGGCATCTGTTATTGGTTGTACCGTTATATCAATGGGGAATTACCGTCATGGGGATGATGAAGGGAATGATGTGGATTCTATAGATTTTGATACGCTGATCAAGAATCTTGAGGATTTGACTAAAGGCAAGGATACATTAATCCCAAAGTTTGACTATCAGAAAAAGAAGCGTGTGGGCTATAAAGCAATAAAGAGCGCTTCATCTGGGGTGGTAATAGTTGATGGCACATATGCATTGCATGCAAAACTGCGGTCTTTACTGGACATTCGAGTTGCTGTGGTTGGTGGTGTTCATTTTAGCTTGCTTTCTAAAGTTCGCTATGACATTGGAGATTCTTGTTCACTGGATTACCTCATAGATAGCATTTTTCCACTGTTTAGGAAACACATTGAGCCAGATCTTCATCATGCACAGATCAGAATTAATAACAGCTTTGTCTCATCATTCAGAGAGGCAATATACAAGGTTAAATGCATAAGTGAGTCTACAGATGGACATTCAGGTTCCGCTTTTCAAGGAAATGATGCCCAAACAGACAATTTTATTGAAATGTACCTTAGACCACCTTCATCTAGCGAAGAAGCAAGGATAAATGATTGGATCAAAGTGCGGCAGTCTGGAATTAGATATTATCTATCACTTGGTGACCAGAGGATTGTCGACAAGAATTTCATTATCAGGCCTAAAGCTGAATTTGAGGTTGGTCGAATGACATTGGGTGGGCTGTTGGCTCTTGGGTATACTGTTGTGGTTAGTTATAAGCGTGCATCGGCAATTGTCAATAATGGCAAGGTTAACATCTCTTTTGAGACCATTGATGTTCTTGGTGAGACATTTATGGTGATGAGAGGAACTAATAGAAAGACTGTCGGAACAGAAGCATCAAGGATGGGTATTGATGGACCTTGGATTACCAAATCATATCTGGAAATGATTCTGGAGAGAAAAGGTGTACCTCGTCTTAGTACTCCACCACTTGTGTCTAATACTACTGTGGCTGCTAGTCAAGAAACAGCAATCATTGCCCCAAAGCCAATCCGTGTTACTCCTAGTGTTGTTACTGGGTTTGAGGATTTACCCCAGCCATGGACTCGATCGCCAACAAAATCTAAAATGGAACCTGTTGTGGCTGCATGGCATTTCATATCTTCAGATTCCTCCCAGCCTGACAATTCAGTTCTAGCAACCACAGATCCTTCATCTTTCAGGGATAGTATTAGGCTTGCTCCAATGCCTGATTCATTTGACTTGGACAGGGGATTGCTTTTGGCTGTTCAAGCAATACAAGCATTGTTGGAGAATAAAGGTGTCCCGGTCATAGTTGGAATTGGAGGTCCAAGTGGGTCTGGGAAGACTAGTTTGGCTCATAAAATGGCAAATATAATTGGTTGTGAAGTAGTTTCCCTGGAAAGCTATTATAAACAAGTAAAGGACTTTAAATATGACGACTTCAGCGCACTTGATTTATCTTTGCTATCGAAGGTAAGGTAA 1779 0.412 MDDEVVQRVFHEGGRDYFQQQPSTSSSSSSILQSLPLHVNFEVCMVLLFMYVEAFLRAQFFMIHEICELREKKDGLVTVGIGGPSGSGKTSLAEKVASVIGCTVISMGNYRHGDDEGNDVDSIDFDTLIKNLEDLTKGKDTLIPKFDYQKKKRVGYKAIKSASSGVVIVDGTYALHAKLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKVKCISESTDGHSGSAFQGNDAQTDNFIEMYLRPPSSSEEARINDWIKVRQSGIRYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLALGYTVVVSYKRASAIVNNGKVNISFETIDVLGETFMVMRGTNRKTVGTEASRMGIDGPWITKSYLEMILERKGVPRLSTPPLVSNTTVAASQETAIIAPKPIRVTPSVVTGFEDLPQPWTRSPTKSKMEPVVAAWHFISSDSSQPDNSVLATTDPSSFRDSIRLAPMPDSFDLDRGLLLAVQAIQALLENKGVPVIVGIGGPSGSGKTSLAHKMANIIGCEVVSLESYYKQVKDFKYDDFSALDLSLLSKVR 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02277 592 PANTHER URIDINE KINASE 513 585 - -
Vian1g02277 592 Gene3D - 519 591 IPR027417 -
Vian1g02277 592 PRINTS Uridine kinase signature 561 572 - -
Vian1g02277 592 PRINTS Uridine kinase signature 534 551 - -
Vian1g02277 592 CDD UMPK_like 78 240 - -
Vian1g02277 592 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 190 IPR027417 -
Vian1g02277 592 Pfam Phosphoribulokinase / Uridine kinase family 120 237 IPR006083 GO:0005524|GO:0016301
Vian1g02277 592 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 522 572 IPR027417 -
Vian1g02277 592 Gene3D - 77 256 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02277 Vian-Chr1 28816339 28823823 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02277 78 237 PRT Gene Family AT1G55810 22.346 1.57e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02277 - - gmx:100778905 987.638