Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02275 ATGGAGTCAGCCATCCACAAGTCCCACATCGTCAAAAACCATCTTCTCCTCTTCTTCTTCTTCTGTTTATTTCTATGCCTGTCTGGTTCTCAATCAAGAAGCCAATCATTCCCCAAAGAAGCCCTCCCCAGCAGGTATGGCTACCTACCAATCAATCCTACTTCTGCGTCTGCAATTTTCTACGCTTTCTATGAAGCCCAAAACTCCACTTTGCCACTTTCCCAAACCCCACTTCTCATTTGGCTCCAAGGTGGCCCTGGTTGCTCCTCCATGCTTGGCAACTTCTACGAGCTTGGACCATGGCGAGTCACCCAATCCCTCACCCTTCAGCCCAACCCTGGTTCCTGGAACAGAATTTTTGGCCTTCTTTTTCTTGATAGTCCCATTGGATCTGGCTTCAGTGTGGCCGCAACCCCAGAAGAGATCCCAAGAGATCAAAACGCGGTTGCCAAACACCTCTTTGCTGCTATAACCAAATTTCTTCAACTGGATCCTCTTTTCAAGCATCGCCCTGTTTATATTACTGGAGAAAGCTATGCTGGCAAGTATGTGCCTGCGATTGGGTACTATATATTGAAGAAAAATGAAAACTTGGAGGCTTCCGAAAGAGTGAATCTGGCCGGTGTAGCTGTCGGGGATGGGTTAACAGACCCCGAAACTCAAGTTGTCTCTCATGCTGTGAATGCATACTATGTTGGATTGATCAACGAGAGACAGAAGAATGAGTTGGAAAAAGGTCAACTGGAAGCTGTTGGGTTGATCCAAAAGAGGAATTGGAGTGCAGCAACAGATGCGAGAAGCAAGGTGTTGAAAAGGTTGCAAGACATGGCAGGGTTGGCTACTTTGTATGACTATACAAGGAAAGCTCCGTACGAGGATGATCTGGTGGAACGGTTCTTGAACATTGCGGAGGTGAAGAAAGCACTGGGGGTGAAAGAATCGTTTGTGTATGAGATATGCAGTGATGTTGTTGGGGAGGCATTACATGGTGATGTGATGAAAAGTGTGAAACAGATGGTGGAATACTTGGTGAGGAAGAGCAGGGTGTTGCTTTATCAAGGTGAGTATGATTTGAGGGATGGAGTTGTCCAAACAGAGGTTTGGGTTAAGACAATGAAATGGGAAGGGATAGAAGAGTTTCTGAATGCTGAAAGGAAGATATGGAAGGTTAATGGAGAGCTTGCTGGGTATGTTCAGTCTTGGAACTCTCTCACCAATGTTGTCGTTTTGGGAGCTGGCCATCTTCTTCCCACTGACCAACCTCTTCATTCTCAAGCCATGATTGAAGATTGGGTTCTCCAAAAGGCTTTGTTTAAAAGCGTGTAA 1326 0.4593 MESAIHKSHIVKNHLLLFFFFCLFLCLSGSQSRSQSFPKEALPSRYGYLPINPTSASAIFYAFYEAQNSTLPLSQTPLLIWLQGGPGCSSMLGNFYELGPWRVTQSLTLQPNPGSWNRIFGLLFLDSPIGSGFSVAATPEEIPRDQNAVAKHLFAAITKFLQLDPLFKHRPVYITGESYAGKYVPAIGYYILKKNENLEASERVNLAGVAVGDGLTDPETQVVSHAVNAYYVGLINERQKNELEKGQLEAVGLIQKRNWSAATDARSKVLKRLQDMAGLATLYDYTRKAPYEDDLVERFLNIAEVKKALGVKESFVYEICSDVVGEALHGDVMKSVKQMVEYLVRKSRVLLYQGEYDLRDGVVQTEVWVKTMKWEGIEEFLNAERKIWKVNGELAGYVQSWNSLTNVVVLGAGHLLPTDQPLHSQAMIEDWVLQKALFKSV 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02275 441 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 135 IPR001563 GO:0004185|GO:0006508
Vian1g02275 441 PRINTS Carboxypeptidase C serine protease (S10) family signature 160 185 IPR001563 GO:0004185|GO:0006508
Vian1g02275 441 PRINTS Carboxypeptidase C serine protease (S10) family signature 112 124 IPR001563 GO:0004185|GO:0006508
Vian1g02275 441 PRINTS Carboxypeptidase C serine protease (S10) family signature 404 417 IPR001563 GO:0004185|GO:0006508
Vian1g02275 441 ProSitePatterns Serine carboxypeptidases, serine active site. 174 181 IPR018202 GO:0004185
Vian1g02275 441 FunFam Carboxypeptidase 28 439 - -
Vian1g02275 441 Gene3D alpha/beta hydrolase 27 439 IPR029058 -
Vian1g02275 441 Pfam Serine carboxypeptidase 44 432 IPR001563 GO:0004185|GO:0006508
Vian1g02275 441 SUPERFAMILY alpha/beta-Hydrolases 43 434 IPR029058 -
Vian1g02275 441 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 44 421 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02275 Vian-Chr1 28779853 28781178 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02275 295 437 Calmodulin-binding Proteins AT2G22960 20.833 8.74e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02275 K09645 - gmx:102663282 718.768