Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02273 ATGGCCTCATCAGTCTCCTTCACCCTTTTCTTCCTCTGCTTCTCTTTCTTTCACTTCCCACTCTTTTTATCACAATCAAGCCAATCATTCCCCAAAGAAGCCCTCCCCAGCAGGTATGGCTACCTACCAATCAGTCCTACTTCTGCGTCTGCAATTTTCTACGCTTTCTATGAAGCACAAAACTCCACTTTGCCAGTCTCCCAAACCCCACTTCTCATTTGGCTCCAAGGTGGCCCTGGCTGCTCCTCCATGCTTGGCAACTTCTACGAGCTTGGACCATGGCGAGTCACCCAATCCCTCACCCTTCAGCCCAACCCTGGCTCCTGGAACAGAATTTTTGGCCTTCTTTTTCTTGATAGTCCCATTGGATCTGGCTTCAGTGTGGCCTCAACCCCAGAAGAGATCCCAAGAGATCAAAACGCGGTTGCCAAACACCTCTTTGCTGCTATAACCAAATTTCTTCAACTGGATCCTCTTTTCAAGCATCGCCCTGTTTATATTACTGGAGAAAGCTATGCTGGCAAGTATGTGCCTGCGATTGGGTACTATATATTGAAGAAAAATGAAAACTTGGAGGCTTCCGAAAGAGTGAATCTGGCCGGTGTAGCTGTCGGGGATGGGTTAACAGACCCCGAAACTCAAGTTGTCTCTCATGCTGTGAATGCATACTATGTTGGATTGATCAACGAGAGACAGAAGAATGAGTTGGAAAAAGGTCAACTGGAAGCTGTTGGGTTGATCCAAAAGAGGAATTGGAGTGCAGCAACAGATGCGAGAAGCAAGGTGTTGAAAAGGTTGCAAGACATGGCAGGGTTGGCTACTTTGTATGACTATACAAGGAAAGCTCCGTACGAGGATGATCTGGTGGAACGGTTCTTGAACATTGCGGAGGTGAAGAAAGCACTGGGGGTGAAAGAATCGTTTGTGTATGAGATATGCAGTGATGTTGTTGGGGAGGCATTACATGGTGATGTGATGAAAAGTGTGAAACAGATGGTGGAATACTTGGTGAGGAAGAGCAGGGTGTTGCTTTATCAAGGTGAGTATGATTTGAGGGATGGAGTTGTCCAAACAGAGGTTTGGGTTAAGACAATGAAATGGGAAGGGATAGAAGAGTTTCTGAATGCTGAAAGGAAGATATGGAAGGTTAATGGAGAGCTTGCTGGGTATGTTCAGTCTTGGAACTCTCTCACCAATGTTGTCGTTTTGGGAGCTGGCCATCTTCTTCCCACTGACCAACCTCTTCATTCTCAAGCCATGATTGAAGATTGGGTTCTCCAAAAGGCTTTGTTTGAAAACTTTCCTAAGGCAAATGTATCAAGTAAGTCTATACTTGTTGAATAA 1344 0.4561 MASSVSFTLFFLCFSFFHFPLFLSQSSQSFPKEALPSRYGYLPISPTSASAIFYAFYEAQNSTLPVSQTPLLIWLQGGPGCSSMLGNFYELGPWRVTQSLTLQPNPGSWNRIFGLLFLDSPIGSGFSVASTPEEIPRDQNAVAKHLFAAITKFLQLDPLFKHRPVYITGESYAGKYVPAIGYYILKKNENLEASERVNLAGVAVGDGLTDPETQVVSHAVNAYYVGLINERQKNELEKGQLEAVGLIQKRNWSAATDARSKVLKRLQDMAGLATLYDYTRKAPYEDDLVERFLNIAEVKKALGVKESFVYEICSDVVGEALHGDVMKSVKQMVEYLVRKSRVLLYQGEYDLRDGVVQTEVWVKTMKWEGIEEFLNAERKIWKVNGELAGYVQSWNSLTNVVVLGAGHLLPTDQPLHSQAMIEDWVLQKALFENFPKANVSSKSILVE 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02273 447 SUPERFAMILY alpha/beta-Hydrolases 36 427 IPR029058 -
Vian1g02273 447 PRINTS Carboxypeptidase C serine protease (S10) family signature 397 410 IPR001563 GO:0004185|GO:0006508
Vian1g02273 447 PRINTS Carboxypeptidase C serine protease (S10) family signature 153 178 IPR001563 GO:0004185|GO:0006508
Vian1g02273 447 PRINTS Carboxypeptidase C serine protease (S10) family signature 105 117 IPR001563 GO:0004185|GO:0006508
Vian1g02273 447 PRINTS Carboxypeptidase C serine protease (S10) family signature 118 128 IPR001563 GO:0004185|GO:0006508
Vian1g02273 447 Pfam Serine carboxypeptidase 37 425 IPR001563 GO:0004185|GO:0006508
Vian1g02273 447 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 37 414 IPR001563 GO:0004185|GO:0006508
Vian1g02273 447 FunFam Carboxypeptidase 22 432 - -
Vian1g02273 447 Gene3D alpha/beta hydrolase 22 439 IPR029058 -
Vian1g02273 447 ProSitePatterns Serine carboxypeptidases, serine active site. 167 174 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02273 Vian-Chr1 28744106 28745449 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02273 288 430 Calmodulin-binding Proteins AT2G22960 20.833 9.51e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02273 K09645 - gmx:100780822 728.013