Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02263 ATGGAAGTTTGTTGGATAGGGATATGTGGAATGGGAGGATCTGGTAAAACCACCCTTGCCAAAGCCATCTATAACCAAATTCATGGTACATTCACGGAGAAAAGTTTCATTGAAGATACTTCAGAAGTTATTCGAACAGGAGGGCATGCTAAGTTACAAGAACAACTTCTTTCTGATTTGCTAAAGACAGAGGTCAAGATACATAGCGTTGAGATGGGGATAAGTATGATTCGGGAAAGATTATTTGGGAAAAGGGTGCTCATTATACTAGATGATATGAATGAGAATGATCCATTAGACCTATGGGAAAGTAGTGCATGGTTAGGTGAAGGAACTGTAATAATCATTACAACAAGAGATGAAGACCTACTGAGGAGAAAACAAGTTTATTCTATTTTTCAGATAAACGTAATGAACCCAAACGAGTCCCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAAGCAAAACCAAAAGAGGAATACCATTTCCTTGCAAAAAGAGTAGTTGCTTATTGTGGAGGACTACCTCTAGCTCTTGAAGTCATTGGAAGTTATTTATACGAGAGGACGAAAGAAGAATGGAATAGAGTATTGTTAAGATTAGACAATATTCCCCAACACGATGTTCTGCAGATATTGAAAATAAGCTTCGACGGTTTAAGTAATCAAAAGGAAAAAGATTTATTCCTTGATGTATGTTGTTTCTTTGTCGGTGAAGGCAGAGCCTATGTTACGAAGATCCTTAATGGCTGTGGAGTAGATCCTGACAATGGAATAAGAGTTCTCATAGAGCGTAGCCTCATAAAAGTTAAAAAGAACAACAAATTTGGAATACATCCTTTGCTACTAGATATGGGAAGAGAAGTTACTCGTGAAATTTCAAAAAAGGAACCCCGGAACAATAGGCTGTGGCTTGATGAGGATACGAAATATGCAGTCTCAGAGAATACTCTCTTTTCATCACAGGGGACAAAAGTCATTCGGAGAATGCCTACCAGAAGTTATTTCTTCGACCCTTATCCTTTAGCGGTAAGAGACCCCTTTTCATCACTGGGGACAAAAGTCAGTCTGGGATTGCTTACCAAAAATTATTTCTTCGAACCTTATCCTGTAGAGGTAAGAGACCCATCGAGATTGCTGAAAATTGCTGGAGATTCTGAGTACCTTCATAAGAAACTGAGATGGATCAGTTTCCAAGGGTTTTCTTCAGAATACCTACCTAACGACTTTTATCTGCATGATGCAATAGCGATTGACTTAAAACACAGTCTTCTTCGATTAGTCTGGAAAGAACCCCAGGTTTTGGCGTTGCTGAAAGTCCTTAATCTTAGTCACTCAAAGAACTTGAGAGAAACCCCTGACTTTTCGAGACTACCAAGTCTTGAACATCTCATTCTCAAAGATTGTCCAAAATTGAACAAAGTACACCAATCTATTGGTTTTCTCTGCAATCTTACACTGCTAAATTTGGAGGACTGTACAAGTCTAAGCAATCTCCCCAGAGAGATATATATGTTGAAATCTATAAAAACTCTCATTCTTTCTGGTTGTTCGAAAATTTTCCTTTTGGAAAAAGATATAGTGCAAATGGAATCCTTGATAACTCTAATTTCTGAAAATACAGCCGTGAAACAAGTGCCTATTTCAATTGCAAGCTCAAAAAGCATTGGGTATATATCCATACGTCAATTAGAGGGACTGTCACGTAATCTTTTACCTTCTATCATTGGTTCTCGAATGTCGCCAACAATGAATCCCCTATCTTATATTCATTCATTCATGGATATGGAGGATAAGAGTTGGGATCATATTGCACCATTTCTTAGCCGCCTTTCAAATCTTCGAAGTGTTTTCGTGCAGTGTGACCCTGAGTTTGAACTATCTAAGCAACTAAATACTATACTGGTTGAATATGGTTTAAATATTACCGGAATCAGGGATTCAAAGCATCAATTCAGGTCTTATTTGATTGGTGTTGGAAGATACAAAGAATTCTTCAATGCTGTCAGTGATAGCATATCTGAGGTATTGGCAAGCAGTCAGTCGTCTGATGCTTCTCTCCCAGGTGACAATGATCCTAATTGGTTGGCCCACATGGGTGAGGGACATTCTGTTTCTTTCACTGTGCCTCGGGATCTTGTCATGAAGGGAATAGCTTTGTGTGTTGTTTATTTATCAACCTCCAAAATCACTCAACCTGAACTTACTACTTTCTTAATTGTTAATTACACGAAGTGCACATTGCATATACACAACCATCGCACAGTAATTTCTTTTAGTGATGAAGATTGGCAAGGCATAATGTCAAATTTAGGATCTGGAGACAAGGTGGAGATTTTTGTGACTTTTGGTCATGGATTGGTGGTTAAGAACACTGCTGTGTATCTGATCTATAATGAGCCAAAGAAAAATTCCCTCATTAAATTCCTAAAGAAAATTGGGATGTGA 2448 0.3824 MEVCWIGICGMGGSGKTTLAKAIYNQIHGTFTEKSFIEDTSEVIRTGGHAKLQEQLLSDLLKTEVKIHSVEMGISMIRERLFGKRVLIILDDMNENDPLDLWESSAWLGEGTVIIITTRDEDLLRRKQVYSIFQINVMNPNESLELLSWHAFREAKPKEEYHFLAKRVVAYCGGLPLALEVIGSYLYERTKEEWNRVLLRLDNIPQHDVLQILKISFDGLSNQKEKDLFLDVCCFFVGEGRAYVTKILNGCGVDPDNGIRVLIERSLIKVKKNNKFGIHPLLLDMGREVTREISKKEPRNNRLWLDEDTKYAVSENTLFSSQGTKVIRRMPTRSYFFDPYPLAVRDPFSSLGTKVSLGLLTKNYFFEPYPVEVRDPSRLLKIAGDSEYLHKKLRWISFQGFSSEYLPNDFYLHDAIAIDLKHSLLRLVWKEPQVLALLKVLNLSHSKNLRETPDFSRLPSLEHLILKDCPKLNKVHQSIGFLCNLTLLNLEDCTSLSNLPREIYMLKSIKTLILSGCSKIFLLEKDIVQMESLITLISENTAVKQVPISIASSKSIGYISIRQLEGLSRNLLPSIIGSRMSPTMNPLSYIHSFMDMEDKSWDHIAPFLSRLSNLRSVFVQCDPEFELSKQLNTILVEYGLNITGIRDSKHQFRSYLIGVGRYKEFFNAVSDSISEVLASSQSSDASLPGDNDPNWLAHMGEGHSVSFTVPRDLVMKGIALCVVYLSTSKITQPELTTFLIVNYTKCTLHIHNHRTVISFSDEDWQGIMSNLGSGDKVEIFVTFGHGLVVKNTAVYLIYNEPKKNSLIKFLKKIGM 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02263 815 Pfam NB-ARC domain 3 203 IPR002182 GO:0043531
Vian1g02263 815 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 539 IPR044974 GO:0006952
Vian1g02263 815 Gene3D - 1 131 IPR027417 -
Vian1g02263 815 Gene3D Ribonuclease Inhibitor 380 653 IPR032675 -
Vian1g02263 815 SUPERFAMILY L domain-like 387 617 - -
Vian1g02263 815 Gene3D - 138 221 IPR042197 -
Vian1g02263 815 PRINTS Disease resistance protein signature 172 186 - -
Vian1g02263 815 PRINTS Disease resistance protein signature 5 20 - -
Vian1g02263 815 PRINTS Disease resistance protein signature 80 94 - -
Vian1g02263 815 PRINTS Disease resistance protein signature 504 520 - -
Vian1g02263 815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 231 IPR027417 -
Vian1g02263 815 SUPERFAMILY "Winged helix" DNA-binding domain 208 309 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02263 Vian-Chr1 28466818 28469906 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02263 1 522 WRKY Transcription Factor Family AT5G45050 30.827 4.92e-63 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02263 - - vun:114165123 1034.63