Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02262 ATGGGTTATTGCAAAGAAGGGTCGTCTTATTATAACGTTCTTGGTGTTAGTTCGGATTCTAGCGTGGAAGAGATAAAGCGTGCTTACAGAAAGCTTGCTATGCAATGGCACCCTGATAGGTGGACAAAGATGCCTTCTTTGCTGGGAGAAGCCAAACACAAATTCCAGCAAATTCAAGAAGCCTATTCGGCAGTGTTGTCGGACAGTAAGAAAAGAACTCTGTATGATGCGGGTTTGCATGATCCTCAAGAGGGAGAGGACGAGGGGTTTTCTGATTTTTTGGAAGAAATGTTGTCTCTCATGGCTCAAGCGAGGAGAGAGAAAAAACATTACGATTTGAAAGAGTTGCAGGGGATGTTGATGGAAATTGCTAAAGGATTCGAGTGTCCTTCAATGTACTGTGGGGTGTCCTCTGCGATTGATGAGTCTCGATGCTTAAAGAAGACTCGTTTAGACAAGAGCACGGGGGAGAATAAGGGGTCACATTTTCAAGTACCTGATCTTAACCTCTATTGCAGTTAA 522 0.4368 MGYCKEGSSYYNVLGVSSDSSVEEIKRAYRKLAMQWHPDRWTKMPSLLGEAKHKFQQIQEAYSAVLSDSKKRTLYDAGLHDPQEGEDEGFSDFLEEMLSLMAQARREKKHYDLKELQGMLMEIAKGFECPSMYCGVSSAIDESRCLKKTRLDKSTGENKGSHFQVPDLNLYCS 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02262 173 Gene3D DnaJ domain 7 118 IPR036869 -
Vian1g02262 173 SMART dnaj_3 8 71 IPR001623 -
Vian1g02262 173 ProSiteProfiles dnaJ domain profile. 9 79 IPR001623 -
Vian1g02262 173 SUPERFAMILY Chaperone J-domain 8 85 IPR036869 -
Vian1g02262 173 PRINTS DnaJ domain signature 50 70 IPR001623 -
Vian1g02262 173 PRINTS DnaJ domain signature 11 29 IPR001623 -
Vian1g02262 173 PRINTS DnaJ domain signature 29 44 IPR001623 -
Vian1g02262 173 PRINTS DnaJ domain signature 71 90 IPR001623 -
Vian1g02262 173 Coils Coil 94 114 - -
Vian1g02262 173 PANTHER PUTATIVE, EXPRESSED-RELATED 5 131 - -
Vian1g02262 173 Pfam DnaJ domain 10 76 IPR001623 -
Vian1g02262 173 CDD DnaJ 10 68 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02262 Vian-Chr1 28460146 28461090 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02262 10 77 C2H2 Transcription Factor Family AT1G74250 47.826 2.40e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02262 - - gmx:100306079 279.256