Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02255 ATGGCTCAGGTTCAGGTTCAGCCTCAGAATGCGATGCCCGGTCCCAACGGTGCTGCTGCTGCTGCTGGGGGAAACCAGTTCGTTACGACATCGCTTTACGTCGGAGATCTCGACCCCAACGTCACGGACTCACAGCTTTATGACCTGTTCAGTCAATTGGGCCAAGTTGTGTCTGTTAGGGTTTGCAGGGACTTGACCAGCCGAAGATCGCTCGGTTACGGCTATGTCAACTATAGCAACCCCCAAGATGCTGCCAGAGCATTAGATGTTCTGAATTTCACTCCTCTCAACAACAAGCCCATCCGAATTATGTATTCACATCGTGATCCCAGTATCCGGAAAAGTGGGGCAGGAAATATTTTTATCAAGAATTTGGATAGGGCAATTGACCACAAGGCATTACATGATACCTTCTCTACATTTGGGAATATCCTTTCATGCAAGGTAGCAACGGATTCATCTGGGCAATCAAAAGGATATGGTTTTGTTCAGTTTGATAATGAGGAATCTGCCCAAAAAGCCATAGAGAAGCTGAATGGTATGCTGTTGAATGATAAGCAAGTGTATGTGGGACCCTTCCTTCGCAAGCAAGAGAGAGAGACTGCTATTGACAAGGCAAAATTCAATAATGTTTTTGTAAAGAATCTAGCAGATTCGACTAGTGATGATGAATTGAAGACAATTTTTGGTGAATTTGGAACTATTACTAGTGCTGTAGTGATGAGGGATGGAGATGGGAAATCAAAGTGCTTTGGGTTTGTGAATTTTGAGAATGCTGATGATGCTGCTAGGGCTGTTGAGGCTCTCAATGGCAAAAAATTTGATGATAAGGAATGGTACGTTGGAAAAGCTCAGAAGAAATCTGAAAGGGAGAATGAATTGAAACAACGATTTGAGCAGAGCATGAAAGAAGCTGCTGATAAATATCAAGGGGCAAACTTGTATGTCAAAAATTTGGATGATAGCATTAGTGATGATAAACTTAAGGAGCTGTTCTCCCCTTTTGGTACCATCACCTCTTGCAAGGTTATGAGGGACCCAAATGGCGTTAGTCGTGGATCTGGATTTGTTGCATTCTCAACTCCTGAGGAGGCATCTAGAGCACTCTCTGAGATGAATGGGAAAATGGTGGTAAGTAAACCTCTGTATGTGACTCTAGCCCAAAGGAAAGAAGATAGAAGAGCTAGACTGCAGGCTCAGTTTGCTCAAATGCGACCTGTTGGAATGCCACCATCTGTTGGTCCTCGTGTGCCAATGTATCCTCCAGGTGGTCCAGGTATTGGTCAACAAATATTTTATGGCCAAGGCCCTCCTGCTATCATTCCTTCCCAGGCCGGATTTGGTTACCAACAACAACTTGTGCCTGGTATGAGGCCAGGTGCAGCTCCTGTGCCAAATTTCTTTGTGCCAATGGTTCAGCAGGGACAACAGGGCCAGCGCCCTGGTGGAAGGCGTGCAGTCCAGCAGTCCCAGCAGCCAGTTCCAATGATGCCACAGCAGCAAATTCCTATTGGGGCTTTGGCATCGGCTCTGGCTAATGCTTCTCCAGAGCAGCAGAGGACGATGCTGGGTGAGAATCTTTACCCCCTTGTGGAGCAGTTAGAGCCTGATAATGCTGCAAAAGTCACAGGCATGCTTCTTGAGATGGACCAGACTGAAGTTCTGCATTTGCTCGAGTCACCAGAAGCGCTGAAAGCAAAGGTGGCTGAGGCGATGGATGTTCTAAGGAATGTTGCCCAGCAGCAGCAGGCTGGCGGTGCTGCTGATCAGTTGGCTTCTTTATCACTTAATGACAACCTTGTTTCTTAA 1809 0.4638 MAQVQVQPQNAMPGPNGAAAAAGGNQFVTTSLYVGDLDPNVTDSQLYDLFSQLGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKPIRIMYSHRDPSIRKSGAGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERETAIDKAKFNNVFVKNLADSTSDDELKTIFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKKFDDKEWYVGKAQKKSERENELKQRFEQSMKEAADKYQGANLYVKNLDDSISDDKLKELFSPFGTITSCKVMRDPNGVSRGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVGMPPSVGPRVPMYPPGGPGIGQQIFYGQGPPAIIPSQAGFGYQQQLVPGMRPGAAPVPNFFVPMVQQGQQGQRPGGRRAVQQSQQPVPMMPQQQIPIGALASALANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQQAGGAADQLASLSLNDNLVS 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02255 602 MobiDBLite consensus disorder prediction 1 20 - -
Vian1g02255 602 Gene3D - 1 118 IPR012677 -
Vian1g02255 602 FunFam Polyadenylate-binding protein 17 118 - -
Vian1g02255 602 CDD RRM1_I_PABPs 31 110 IPR034364 -
Vian1g02255 602 Pfam Poly-adenylate binding protein, unique domain 511 575 IPR002004 GO:0003723
Vian1g02255 602 Gene3D - 119 191 IPR012677 -
Vian1g02255 602 SMART rrm1_1 313 385 IPR000504 GO:0003723
Vian1g02255 602 SMART rrm1_1 119 191 IPR000504 GO:0003723
Vian1g02255 602 SMART rrm1_1 210 282 IPR000504 GO:0003723
Vian1g02255 602 SMART rrm1_1 31 104 IPR000504 GO:0003723
Vian1g02255 602 SMART poly_2 515 578 IPR002004 GO:0003723
Vian1g02255 602 FunFam Polyadenylate-binding protein 199 294 - -
Vian1g02255 602 Gene3D - 293 398 IPR012677 -
Vian1g02255 602 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 279 IPR000504 GO:0003723
Vian1g02255 602 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 102 IPR000504 GO:0003723
Vian1g02255 602 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 382 IPR000504 GO:0003723
Vian1g02255 602 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 188 IPR000504 GO:0003723
Vian1g02255 602 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723
Vian1g02255 602 SUPERFAMILY RNA-binding domain, RBD 209 390 IPR035979 GO:0003676
Vian1g02255 602 FunFam Polyadenylate-binding protein 295 400 - -
Vian1g02255 602 CDD RRM4_I_PABPs 311 389 - -
Vian1g02255 602 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 503 580 IPR002004 GO:0003723
Vian1g02255 602 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 190 IPR000504 GO:0003723
Vian1g02255 602 SUPERFAMILY RNA-binding domain, RBD 30 199 IPR035979 GO:0003676
Vian1g02255 602 Gene3D - 499 582 - -
Vian1g02255 602 CDD RRM2_I_PABPs 116 192 IPR045305 -
Vian1g02255 602 Coils Coil 284 308 - -
Vian1g02255 602 FunFam Polyadenylate-binding protein 119 192 - -
Vian1g02255 602 PANTHER RNA BINDING PROTEIN 29 92 - -
Vian1g02255 602 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 389 IPR000504 GO:0003723
Vian1g02255 602 FunFam Polyadenylate-binding protein 499 581 - -
Vian1g02255 602 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Vian1g02255 602 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 31 491 IPR006515 GO:0003723
Vian1g02255 602 Gene3D - 194 292 IPR012677 -
Vian1g02255 602 CDD RRM3_I_PABPs 208 287 - -
Vian1g02255 602 SUPERFAMILY PABC (PABP) domain 466 596 IPR036053 GO:0003723
Vian1g02255 602 SMART rrm2_1 31 104 IPR003954 GO:0003676
Vian1g02255 602 SMART rrm2_1 210 282 IPR003954 GO:0003676
Vian1g02255 602 SMART rrm2_1 119 191 IPR003954 GO:0003676
Vian1g02255 602 SMART rrm2_1 313 385 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02255 Vian-Chr1 28245005 28249825 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02255 1 597 Eukaryotic Initiation Factors Gene Family AT4G34110 70.219 0.0 902
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02255 K13126 - gmx:100813735 1025.39