Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02239 ATGGGAACAACAACCAAAACCATTTTCTCCTCCTTTTTACTCTGCTCACTCCTGCTTCACCTTTACTTTTCAGAAGGAGTAGTAGCACAAGAGGTGGTGGCAAAATCAGAGAGCGAAGCATTAGGGGAACCAGAGAAAAGAGAAACACTAGAAATTATTATAGGTGGTGGAGGTTCCCCTGCTCCTTCCCCTGAAGCTCCATGTCCCCCTCCCCCACCCAAACTTAACCGTTTAGACAGAGCGCGTCGTGCGCTTCTCAACTTCAAAAACCTCATCGATGACCCAAACTGTTACACGCAAAATTGGAACGACCAAACTGATACGTGTGACTTCAACGGGATACGATGCGCCACATATCCAACGGACAAACAGAGAGCAGTTGCAGGAGTGGACTTAAACGGAGCAAGAGTGACGGGTCAAAACGGGTGCGCTTTGCCCCTCTCATCTCTCTTGGGCCAGAGCCAAATACCCGAGCTCACATTCTTCCACGTCAATTCCAACGGCTTCGCCGGCTCTGTCCCCAGCGATGTCATCAATTTCCCTTACTTCTTCGAGCTCGACCTCAGTAACAACAAAGTCAAAGGCCAGTTTCCCCTCGACGCCATTAAGTCAAACCAACTAGTTTTCCTCGACCTCCGCTTCAACGAACTCACCGGCCCGATTCCCTTCCAACTCTTCCAGAAGGATCTCGACGTCATCTTCATCAACAACAACCACTTCACACAGTACCTCCCCCAGAATTTCGGCTCCACGCCGGCCCGCTACCTCACTTTCGCCAACAACAACCTCACCGGCCCGATTCCCAAGAGCGTCGGTTACGCACCCAACCTCACCGAAGTTCTCTTCCTCGGGAACCAGTTCGACGGCTGCTTGCCCATTGAAATCGGAAACCTTAAAAAAGCTGTCGTCTTTGATGTGAGTAAGAATTCTCTCACCGGCCCAATCCCTCTCTCTTTCGGGTGCTTGAAGAGCATTCAGTATCTGAATTTGGCGAACAACAAATTCTACGGCTGTGTTCCCGACAACCTTTGTCAAATTCCTTCTCTCCGCAACAATGGGAATCTCTCCTTGGCCAACAATTACTTCAACGAGCTTGGCCCCTCCTGCTGGAGTTTGATCAAGTCCAAGGTTTTGGATGTCTCAAAGAATTGCATCCATGGGCTGCCAAACCAAAGATCACCCACCGAATGCTATTACTTTTACAAGACGAAGAAGACGTGTCCGAATCCGAGTTCTTTCTATACAGTGCCGTGTAAATCGCACTGGGGAAAACCCAGTTCCGAAACCAATGTTCCAACCTCTGCACCGGTGACTTACAAAGCTCTTAAACCGCATCGTTTGAGATTATGA 1350 0.4941 MGTTTKTIFSSFLLCSLLLHLYFSEGVVAQEVVAKSESEALGEPEKRETLEIIIGGGGSPAPSPEAPCPPPPPKLNRLDRARRALLNFKNLIDDPNCYTQNWNDQTDTCDFNGIRCATYPTDKQRAVAGVDLNGARVTGQNGCALPLSSLLGQSQIPELTFFHVNSNGFAGSVPSDVINFPYFFELDLSNNKVKGQFPLDAIKSNQLVFLDLRFNELTGPIPFQLFQKDLDVIFINNNHFTQYLPQNFGSTPARYLTFANNNLTGPIPKSVGYAPNLTEVLFLGNQFDGCLPIEIGNLKKAVVFDVSKNSLTGPIPLSFGCLKSIQYLNLANNKFYGCVPDNLCQIPSLRNNGNLSLANNYFNELGPSCWSLIKSKVLDVSKNCIHGLPNQRSPTECYYFYKTKKTCPNPSSFYTVPCKSHWGKPSSETNVPTSAPVTYKALKPHRLRL 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02239 449 Gene3D Ribonuclease Inhibitor 253 403 IPR032675 -
Vian1g02239 449 Gene3D Ribonuclease Inhibitor 78 252 IPR032675 -
Vian1g02239 449 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 32 427 - -
Vian1g02239 449 Pfam Leucine rich repeat N-terminal domain 80 116 IPR013210 -
Vian1g02239 449 SUPERFAMILY L domain-like 81 387 - -
Vian1g02239 449 FunFam Leucine-rich repeat receptor protein kinase EMS1 244 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02239 Vian-Chr1 27948421 27949770 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02239 77 397 Trihelix Transcription Factor Family AT1G12040 43.077 6.56e-73 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02239 - - ccaj:109818312 639.417