Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02235 ATGCAAGGTCAAAGGAGAACTGTTGGATCGTTCCCAACAATTATTAGTATGATGCAAGGGCCCAGTTCTCGTGGCACTGATACAAATCATCAGTCTTCCTTGAATCATGTGCAAAATGCTGTAGATTCCCGATTTTCAGATTATAGGGGATCTTTTGGTGAGACTGCATATTTATGTAGTACTAGTCATGATGTTCAAAGCTTCAGTTGTTGGAATTTAGGGGAATCTAGTTCTAGACTGAATCTGACCAACCAAAGCAATGCGGAAGGTCTAAAATCAGAACATGGTTCGTCATCTTCATATAATGCTACTAGTGAGGATGATCTCGAGTATGAGGAAAGACAATTTGAACCAAATAGAGTAATTTTTCCTGTTAGCTCAAGTAATAACCTACATGGCAATCAATCTAGAGTTTATCCTTCCCTTTGGCAAGGCTCTAGTTCTAATCGTATTACCCAATATATTAGTCCAGATATGGGGCATATTGCCCATGCTTCTGACCGTGGGAAGGGAAAAGAAGCTAGTAGTAGTGTTGATGACTATAATACTAGTGGAATAGATAGAGAAAAGACATTATTTGGCAGTGCATCATGCAATTACATAGGACCTTCATCTGAAAACTCTGGATCCATGGCTTGGGTTGAAGGTGATAGTTCTAGGCAACTGTGCTCAGGAGGAAGCTCAAGCACGCTTGCACAATCTGAAAATGATTATTGGCCTATTGGTCCTGCTGATCCTAATGCTTCTAGCAACTTAAGTGATGTTACAACTTTGGAGGATATTCCTGTTACCAGTCCTCCATTACTGCAGAATGTAAGAAATGAAGTGAGACAAAAAGTTTCCAATGCATTTCCTTTGATAAGTATTGCAGAAAATCTAGAAAGGCCTGTAAGAAACTTCAATAGAAGAATGAGCCAACTACAGGATCAGGAATCTATACATGTCAATTTACCATCAATAGGGTGTTTTAGGCATCATAATCATTCTTCGCTGAATCAAATACCCAGCTCTCAGTCACTTAATGATTCATTGGAATTGAGGTTAATAGCTGAAGTAACAACTGCTAATTCTGGTACTTCTTTAAACCAATCACCTGCCCAACGCATCCATTCTTTTCCTTTGAGTAGAATCGCCAATCCTAGGGAGGGTAGATCTTCATTTTCTTATAACTCTGGAGATAGAGTTATTCGAGAAGATTTTAATTTGAGAGTGTTTCCCAGAGTTAGTACTGAGCACCTTATGAATGCACCTGCATCTTTACAATATGAACCTACACATTGGCATACACCTTCTGGTAATGTGAACTTTTCTGAAGGTGTACCTCCTCGATCCTGGATTGGATCTAGTCCAAATGCCCACTCTTCACATAACTCTGGCTGGAATTTTAATCATGAAGTCCCAATTGAAAATGTGCACAGTGTGTCAGAGTTCAATCTTTGGCCCCCTTTTCCATCAATTTGCTCTGCATCTGGTGTTCATAATGGTCATTCTACTCCATCTTCCTCTGGTCCTCCCTCGTTTACCCAGGGTTCTGGCAACAATCAATCCTATCTAAGAACAACATTGTTAACGGAAAGAAGTGGTGCTGATGTTCTCTCTAGTCCCCATTCATTGCAAGCACTAACCTTCGGCAATGAGGGGAGACGACAACTACTATCCGAGGAATTGTTGGCATTGGAGGAACGTATAGGAGATGTTAGCACTGGATTGAGTGAGGATGTCATTGTTAAGTTGATGAAGCAACGACTTTACACACCACTCATGACACAGTCTTCTAAAGTTTTGGAACCTTGTTGCATTTGTCAGGAGGAATTTGGTGATGGAGAGAATGTTGGATCACTGGATTGTGGGCATGAGTTTCACAGTGCCTGCATCAAGCAGTGGCTAATGCAGAAGAACATCTGCCCCATTTGCAAAGTAACAGCCTTAGCTACTTGA 1938 0.4076 MQGQRRTVGSFPTIISMMQGPSSRGTDTNHQSSLNHVQNAVDSRFSDYRGSFGETAYLCSTSHDVQSFSCWNLGESSSRLNLTNQSNAEGLKSEHGSSSSYNATSEDDLEYEERQFEPNRVIFPVSSSNNLHGNQSRVYPSLWQGSSSNRITQYISPDMGHIAHASDRGKGKEASSSVDDYNTSGIDREKTLFGSASCNYIGPSSENSGSMAWVEGDSSRQLCSGGSSSTLAQSENDYWPIGPADPNASSNLSDVTTLEDIPVTSPPLLQNVRNEVRQKVSNAFPLISIAENLERPVRNFNRRMSQLQDQESIHVNLPSIGCFRHHNHSSLNQIPSSQSLNDSLELRLIAEVTTANSGTSLNQSPAQRIHSFPLSRIANPREGRSSFSYNSGDRVIREDFNLRVFPRVSTEHLMNAPASLQYEPTHWHTPSGNVNFSEGVPPRSWIGSSPNAHSSHNSGWNFNHEVPIENVHSVSEFNLWPPFPSICSASGVHNGHSTPSSSGPPSFTQGSGNNQSYLRTTLLTERSGADVLSSPHSLQALTFGNEGRRQLLSEELLALEERIGDVSTGLSEDVIVKLMKQRLYTPLMTQSSKVLEPCCICQEEFGDGENVGSLDCGHEFHSACIKQWLMQKNICPICKVTALAT 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02235 645 Coils Coil 290 310 - -
Vian1g02235 645 MobiDBLite consensus disorder prediction 88 112 - -
Vian1g02235 645 FunFam E3 ubiquitin-protein ligase MBR2 565 643 - -
Vian1g02235 645 ProSiteProfiles Zinc finger RING-type profile. 598 639 IPR001841 -
Vian1g02235 645 MobiDBLite consensus disorder prediction 164 183 - -
Vian1g02235 645 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 218 643 IPR045191 GO:0061630
Vian1g02235 645 MobiDBLite consensus disorder prediction 491 514 - -
Vian1g02235 645 MobiDBLite consensus disorder prediction 88 105 - -
Vian1g02235 645 SMART ring_2 598 638 IPR001841 -
Vian1g02235 645 Pfam Ring finger domain 598 639 IPR001841 -
Vian1g02235 645 SUPERFAMILY RING/U-box 597 641 - -
Vian1g02235 645 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 561 643 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02235 Vian-Chr1 27867262 27870373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02235 1 645 C3H Transcription Factor Family AT2G15530 28.647 1.79e-48 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02235 - K19041 gmx:100809024 921.383