Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02234 ATGCTCTTGATGTCAGAAGATCAAAGTTTGTTGCATGATACGAACTTATTGTGGGAAAAAACGAATTCACAAAAGCAGAAGAATGAAAAGGTCGAAGGTCTCATGAATAAGAAGCGAAATCGAGAGCTCAACAAAGTTAGCAGTGCAGAAGGAAATGCTGAAAAGAGTCGCGAATCTGATCACGAAATGCATATATGGACTGAGAGAGAAAGGAGAAAGAAAATGAAAAACATGTTCGCTAGTCTTCATGCATTGCTTCCCCATCTTCCTTCTAAGGCGGATAAATCAACGGTCGTGGATGAAGCAGTGAGCTACATCAAAAATCTTGAGAGAACCCTGGAAAAGCTTGAGAAGCAGAAAGAAGAAAGGGTCCGATGTGGGCCCACGTTTTGGAATGAGTCATCACCGTCCATGTTCACTGCTCAGGGACTTTCTTCTAATTACGGCTTTTCGAACGCGATTATGGGAACTTCTTCAAACGCACTTTTATTCCCTGCACAGCAGCAGCCCGTAGCTTTTGATAAAACGTGGGCCTCTTCAAACATGGTCTTGAATGTTTGTGGAGATGAGGCCCAATTCTGCATTTGCGCGGCCCATAAACCAGGTCTCGTGTCCACCATAGTTTTTGTGCTTGATAAATACAAGATAGAGCTTGTATATGCCCACATTTCGTGCCTTGGGAATGGAAATGCAATCATGATTCAAGCTCACGGAAAACGAGCTTCACATCAGTTCCTGGATGCAAATTCAGTGGAAGAAATTTACAGGCAAGCTGCGGGAGAGATTCTTCTATGGATCGCTTAA 804 0.4328 MLLMSEDQSLLHDTNLLWEKTNSQKQKNEKVEGLMNKKRNRELNKVSSAEGNAEKSRESDHEMHIWTERERRKKMKNMFASLHALLPHLPSKADKSTVVDEAVSYIKNLERTLEKLEKQKEERVRCGPTFWNESSPSMFTAQGLSSNYGFSNAIMGTSSNALLFPAQQQPVAFDKTWASSNMVLNVCGDEAQFCICAAHKPGLVSTIVFVLDKYKIELVYAHISCLGNGNAIMIQAHGKRASHQFLDANSVEEIYRQAAGEILLWIA 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02234 267 CDD bHLH_AtbHLH_like 64 117 IPR045239 -
Vian1g02234 267 Gene3D - 50 125 IPR036638 GO:0046983
Vian1g02234 267 Coils Coil 99 126 - -
Vian1g02234 267 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 59 109 IPR011598 GO:0046983
Vian1g02234 267 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 21 266 IPR044278 GO:0003700|GO:0006355|GO:0009960
Vian1g02234 267 SMART finulus 67 115 IPR011598 GO:0046983
Vian1g02234 267 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 57 122 IPR036638 GO:0046983
Vian1g02234 267 MobiDBLite consensus disorder prediction 23 45 - -
Vian1g02234 267 MobiDBLite consensus disorder prediction 22 63 - -
Vian1g02234 267 Pfam Helix-loop-helix DNA-binding domain 64 110 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02234 Vian-Chr1 27857759 27858936 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02234 60 267 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 37.815 7.99e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian1g02234 HLH 2.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02234 - - pvu:PHAVU_003G048000g 389.808