Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02233 ATGGATTTCTTATTGGAAAATCATACAGATACTTCTTCTAGTTCTAATCGTTCCAGTGAAATTAAAACAAACCAAAACCTTGTTGTGAATACGATGTCGAATGACGATGTTGTTGATGAAAATGAGAAGAAAATTATTACTAGTGGTGAAGACTCCTACGATCCGGAAACTAATAATGAAATGCATCTATCCATCGAAAGAGGCCGAAGAAAGAAAATGAAAGAAATGTTCGATGATCTTAGTGCTTTACTTCCGCAACTTCCTTCAAAGGCTGATAAAGCAACCGTAGTGAACGAAGCAGTGGACTACATAAAAGTTCTGCAGGAAACTCTGGAAAAGCTAGAGAGAAAGAAAGAAGAAAGGGCACAACATGTTCTGAAACAAATTATGGGAAGGAGTTCTGGTGCGGGTTCAGTGTCTGAGAAGCAGAAAGGTTTTGATAAAACTTGGGCTGCTTCAAACATGGTCCTGAACATTCGTGGAAATGAAGCTCAATTCTCGATTTGCTCAGTGCATAAGCCAGGACTCATGACCAACATTGCTTCTGTGCTGGAAAAGCACAACATAGAACTCATTTCTGCAACCATTTCGGCCAATGGAAATGGAAGTACATGCATGATTCAAGTCCATGGAAAACAAGCTTCGGATGCAAATTCAATGGAGGAAACTTACAGGAAAGCTGCTGAAGAAATTATGCCATGGATCTCTTAA 711 0.3938 MDFLLENHTDTSSSSNRSSEIKTNQNLVVNTMSNDDVVDENEKKIITSGEDSYDPETNNEMHLSIERGRRKKMKEMFDDLSALLPQLPSKADKATVVNEAVDYIKVLQETLEKLERKKEERAQHVLKQIMGRSSGAGSVSEKQKGFDKTWAASNMVLNIRGNEAQFSICSVHKPGLMTNIASVLEKHNIELISATISANGNGSTCMIQVHGKQASDANSMEETYRKAAEEIMPWIS 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02233 236 CDD bHLH_AtbHLH_like 62 115 IPR045239 -
Vian1g02233 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 58 122 IPR036638 GO:0046983
Vian1g02233 236 Gene3D - 50 124 IPR036638 GO:0046983
Vian1g02233 236 SUPERFAMILY ACT-like 164 225 IPR045865 -
Vian1g02233 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 57 107 IPR011598 GO:0046983
Vian1g02233 236 Coils Coil 97 127 - -
Vian1g02233 236 Pfam Helix-loop-helix DNA-binding domain 61 108 IPR011598 GO:0046983
Vian1g02233 236 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 30 235 IPR044278 GO:0003700|GO:0006355|GO:0009960
Vian1g02233 236 SMART finulus 63 113 IPR011598 GO:0046983
Vian1g02233 236 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02233 Vian-Chr1 27849442 27854789 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02233 146 208 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 46.875 1.65e-12 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian1g02233 HLH 1.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02233 - - vum:124823917 383.645