Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02230 ATGCTCTACGGGCTTCTCCCTTTGTTGGGAATGTTGGCTTTTCTTGGAATGCAGCTTCCTGTCATAATGGCTGATTGCCCTTTGAATTTTACTGGTTCAAACTTCACACTTGCATCCTCTCTATGCTCTAACCATGGTGACAGAGGAAAATGCTGCCGATACATCAATACTAATGTTGCAATTGCTGTTTCTCGTTTTGCTAATGCAACAGGCAACCTAGGGGTCTCTCAAAATGCGACTGACATCTGCCTCCAAACTATATTTCAAACCTTGCAACTTAATGGAGTTGCACAAAATGCAACAGCTTTCTGTGGTTTCGGAACAAAAATTCCTGTTAATTATGTATGTAAGGGGAGAACTAGTGTTGTCCAAATGCTGCAATCCCCCAGATTTACGGAGGTCACAAAAAATTGCAAAGCGCCACTTGGAGAGGAAAGTAAATGTAAGAAGTGTTTAAATGCTGGCATTGGTTATCTGCATCATATCGGAATTGAAGATAATATAACACTTAGTACATGTCGTGATGCCACTTTTGCTGCATTAGCAAGCCAAGTTGATGAGATATCTACCATTGACATTGCAATTTGTTTCTTTGGGGTTCAAGGACTTCTCAAGCTTCCTGTTTTAGAGTCAACCCCATCCTTGCCTGCTCCTAAGGCTTCTCCAAGCCCACCTGTTTCTGATGGCCCAAGTCAACCATTGTTAAGTGCACCTTTAAAGGGAAAGCATCATTCATATCGTTTGACGTTAGTTCCAGGTATTGCTATTGCAGTTACAGCTGTTGCTGTTATCACACTCATAGTCTTGATAGTTCTAATTCGCCAGAAAAGCAGAGAGCTAGACAAGCCTGATAATTTTGGTAAACCCTGTTCGAAAACCTTACCTCCTTGTACAACATGGAAATTTCAGGAAGGTTCTTCATCTATGTTCCGAAAATTCAGCTACAAGGAGATAAAAAGGGCTACAGAGGATTTTAGTACTATCATTGGTCAAGGGGGATTTGGAACTGTGTATAAAGCTGATTTTTCTGATGGCCTGGTCGCAGCAGTAAAACGGATGAACAGAATATCTGAGCAGGGAGAGGATGAGTTCTGCAGAGAAATTGAGCTTCTTGCCCGGCTGCACCATCGGCATCTTGTTTCCTTGAGAGGCTTTTGCATTCAAAAACGTGAGAGGTATCTGTTTCTGTGTTTTTTATATTCTTCGACATATATACCAATGAATCAAACTCTTCTGAATGTCTATGGCAGGTTTCTATTGTATGAGTACATGGGAAATGGAAGCTTGAAAGATCATCTTCATTCCCCTGGTAAAACACCTTTAAGTTGGCGAACAAGAATCCAAATTGCCATTGATGTGGCCAATGCCCTGGAGTACCTCCATTTCTATTGCGATCCTCCTCTGTGTCACAGAGATATTAAATCTAGCAACACTTTACTGGATGAGAACTTTGTTGCCAAGATAGCTGATTTTGGTCTTGCACAAGCTTCAAAAGATGGATCGGTATGCTTTGAACCTGTAAACACTGAAATTCGGGGAACTCCGGGTTATATGGATCCTGAGTATGTTGTTACTCAAGAGCTCACCGAGAAAAGTGACATATACAGTTTTGGGGTATTACTACTTGAAATTGTAACAGGAAGACGAGCCATTCAAGATAATAAGAATCTAGTAGAATGGGCCCAACCATACATGGAATCAGATACGAGATTATTGGAGCTAGTAGATCCCAATGTGAGGGAGTCTTTTGACTTGGATCAGCTCCAAACAGTAATCTCTATAGTAGCATGGTGCACCCATAGAGAAGGAAGGGCAAGGCCTTCAATAAAACAGGTACTTAGGCTTCTGTATGAGACATCAGAACCAATGCACAGTGAGTTTCTACAAACTGTTGAAGATGAAGAATGTCAGGGAAGTCAGCACAGAGGCAGAAGAAGCAAGGGGAAAATGCTCAGAAATGAAGCATTGTTTCACAGCGGAGAGGGAAGATATCTTGCTTCATCTTCGAGTACATCCCGGTCATATTGCAGTAGAAGTTTTTTACTTGAGACTGGCTCTCCACAGTCTCCGCCAAATATGTTCTCTGTGTGA 2091 0.417 MLYGLLPLLGMLAFLGMQLPVIMADCPLNFTGSNFTLASSLCSNHGDRGKCCRYINTNVAIAVSRFANATGNLGVSQNATDICLQTIFQTLQLNGVAQNATAFCGFGTKIPVNYVCKGRTSVVQMLQSPRFTEVTKNCKAPLGEESKCKKCLNAGIGYLHHIGIEDNITLSTCRDATFAALASQVDEISTIDIAICFFGVQGLLKLPVLESTPSLPAPKASPSPPVSDGPSQPLLSAPLKGKHHSYRLTLVPGIAIAVTAVAVITLIVLIVLIRQKSRELDKPDNFGKPCSKTLPPCTTWKFQEGSSSMFRKFSYKEIKRATEDFSTIIGQGGFGTVYKADFSDGLVAAVKRMNRISEQGEDEFCREIELLARLHHRHLVSLRGFCIQKRERYLFLCFLYSSTYIPMNQTLLNVYGRFLLYEYMGNGSLKDHLHSPGKTPLSWRTRIQIAIDVANALEYLHFYCDPPLCHRDIKSSNTLLDENFVAKIADFGLAQASKDGSVCFEPVNTEIRGTPGYMDPEYVVTQELTEKSDIYSFGVLLLEIVTGRRAIQDNKNLVEWAQPYMESDTRLLELVDPNVRESFDLDQLQTVISIVAWCTHREGRARPSIKQVLRLLYETSEPMHSEFLQTVEDEECQGSQHRGRRSKGKMLRNEALFHSGEGRYLASSSSTSRSYCSRSFLLETGSPQSPPNMFSV 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02230 696 Gene3D Transferase(Phosphotransferase) domain 1 424 641 - -
Vian1g02230 696 Pfam Protein kinase domain 327 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02230 696 ProSitePatterns Protein kinases ATP-binding region signature. 329 351 IPR017441 GO:0005524
Vian1g02230 696 ProSiteProfiles Protein kinase domain profile. 323 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02230 696 FunFam Putative receptor-like protein kinase 424 624 - -
Vian1g02230 696 FunFam Putative receptor-like protein kinase 291 400 - -
Vian1g02230 696 MobiDBLite consensus disorder prediction 217 231 - -
Vian1g02230 696 CDD STKc_IRAK 329 616 - -
Vian1g02230 696 Pfam SPARK 25 162 IPR043891 -
Vian1g02230 696 Gene3D Phosphorylase Kinase; domain 1 297 398 - -
Vian1g02230 696 SMART serkin_6 323 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02230 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Vian1g02230 696 SUPERFAMILY Protein kinase-like (PK-like) 304 619 IPR011009 -
Vian1g02230 696 PANTHER OS01G0750732 PROTEIN 168 636 - -
Vian1g02230 696 MobiDBLite consensus disorder prediction 215 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02230 Vian-Chr1 27786178 27791785 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02230 24 695 Receptor kinase-like Gene Family AT3G19300 57.249 0.0 739
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-1 Vian1g02230 Pkinase 1.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02230 - - gmx:100807955 1210.67