Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02229 ATGGCTACCCCTAGTAAATCAACACAAATAACATCTTCTGACACTTCTGAACAGAAGGGTAAGACTATGAGTGAGTCAAATGCAGCCATTCAATGTCCTTTAAACCAGCAACTCCATAGCTCCTTAGATGGCCCAGTAGCAATCCTTTGGGATATTGAGAATTGTCCTGTTCCAAGTGATGTACGGCCTGAAGATGTAGCAGGTAATATAAGAATGGCTTTACGGGTGCACCCAGTAATTAAAGGAGCTGTTATGCTGTTTTCTGCTTATGGGGATTTCAATTCTTTCCCTAGGCGACTTAGAGAGGGCTGTCAGAGAACTGGTGTTAAACTTATTGATGTTCCAAATGGGAGAAAAGATGCTGCTGATAAAGCTATCTTGGTCGATATGTTCTTATTTGCTCTTGACAACCCTCCACCATCCTCTATTATGCTTATATCTGGAGATGTTGATTTTGCACCAGCACTTCACATCCTTGGTCAGCGAGGATATACTGTTATTCTTGTCATCCCTGCTGGGGTGGGTGTTTCGTCTGCCCTATGCAATGCTGGTAAATTTGTCTGGGACTGGCCTAGTGTGGCACGCGGGGAAGGCTTTGTGCCTCCCTCAAAGGCTTTAGTGCCACCCCGTGGAGGTCCAATTGAGCTTGCTGGATATCTGATGGGGTGCCAAATCAATGACAATTCTGAAGTATTAAATGAAGAAGAAGCAATAGTTTATAGAGGTATGTCACAGAACTATTACAACTCAAGGGAATTTTCATTAGTGTCACAATCACTGTCTGAATACAACTGTGGCACATCGAACATGACATGCTTGCCGACAACTATGAGATCACACAGCCTTCCATCTGTATTCAATGATGTTCAAGGAGGGTCTATGATGCCTTCTGGTGATCAAAATGAATGCCAGTTATGGGTACAACCTGGGGATTTAAATGGCCTCAAGGGGCAGCTGGTAAGATTGATTGAACATTTTGGAGGATGCCTGCCTCTCGCCCGAGTTCCGGCAGAGTACCAGAAAATTTATGGGAGACCTCTTTATGTTGCTGAATATGGGGCAATAAAGTTGGTCAATCTTTTCAAGAAGATGGGCGATGCCTTGGCTGTGGAAGGGAAGGGGCATCGGAAATTTGTGTATCTCAGAAACTGGAAGGCAGGCCCAAGTGCTCCCCCTCTCTCTCTGGCAAAGAAAGACAAGAAGGGAAAGGGAACCCAGGAAGAGAATGTGAATGTTGTCACTGGTGGGTGCTCTTCAGATGAGTTTTCAGATGAAGAAAGAGTAGTCATAGAAGAACATGACGAAAGAAGTTGCACAGGCAAGGGCAATCAGGAGAGTGCAGCAAAATGTGAAGTCGATGACTGTGTTATTGAGCACTTCAAGTATGAGCTGCAAGAGATTCTAGTAAGCTATTCTTGTCGAATATTCCTTGGTTGTTTTGAGGCTATATACCAGCAGCGATACAAGAAACAGCTGGAATATCAGAGATTTGGTGTGGACAAGTTGGAGGATTTGTTTGAGAAAGTGAGTGATGTGGTGGTATTGCATGAGGAACCAGTAAGCAGGAAGAAGTTCCTGGCTGCTGTGGGTGGTTAG 1596 0.4449 MATPSKSTQITSSDTSEQKGKTMSESNAAIQCPLNQQLHSSLDGPVAILWDIENCPVPSDVRPEDVAGNIRMALRVHPVIKGAVMLFSAYGDFNSFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILVIPAGVGVSSALCNAGKFVWDWPSVARGEGFVPPSKALVPPRGGPIELAGYLMGCQINDNSEVLNEEEAIVYRGMSQNYYNSREFSLVSQSLSEYNCGTSNMTCLPTTMRSHSLPSVFNDVQGGSMMPSGDQNECQLWVQPGDLNGLKGQLVRLIEHFGGCLPLARVPAEYQKIYGRPLYVAEYGAIKLVNLFKKMGDALAVEGKGHRKFVYLRNWKAGPSAPPLSLAKKDKKGKGTQEENVNVVTGGCSSDEFSDEERVVIEEHDERSCTGKGNQESAAKCEVDDCVIEHFKYELQEILVSYSCRIFLGCFEAIYQQRYKKQLEYQRFGVDKLEDLFEKVSDVVVLHEEPVSRKKFLAAVGG 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02229 531 MobiDBLite consensus disorder prediction 1 26 - -
Vian1g02229 531 Pfam OST-HTH/LOTUS domain 314 379 IPR025605 -
Vian1g02229 531 Pfam OST-HTH/LOTUS domain 457 519 IPR025605 -
Vian1g02229 531 ProSiteProfiles OST-type HTH domain profile. 311 383 IPR025605 -
Vian1g02229 531 Gene3D - 454 523 IPR041966 -
Vian1g02229 531 Gene3D - 311 380 IPR041966 -
Vian1g02229 531 ProSiteProfiles OST-type HTH domain profile. 456 530 IPR025605 -
Vian1g02229 531 CDD PIN_limkain_b1_N_like 45 171 - -
Vian1g02229 531 CDD LOTUS 457 519 - -
Vian1g02229 531 CDD LOTUS 312 381 - -
Vian1g02229 531 PANTHER LIMKAIN B LKAP 18 494 IPR024768 GO:0005777|GO:0010468
Vian1g02229 531 Pfam NYN domain 45 185 IPR021139 GO:0004540
Vian1g02229 531 Gene3D - 42 191 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02229 42 196 C2H2 Transcription Factor Family AT5G61190 41.935 2.03e-28 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02229 - - gmx:100818186 985.711