Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02224 ATGAACTTCAGGAACTACGGTGATAATAACCCCACTTGGGATGCCATGCATGGGAAGACACCGGCGGCAAATGTTGGTTCTCTACTGAGACAGCCATCATCAGTATACTCCCTTACATTTGATGAGTTTCAGAGCACCATGGGTGGGGTTGGGAAGGAATTTGGGTCCATGAACATGGATGAACTCTTGAAGAACATTTGGACAGCTGAAGAGACTCAGGCCTTGACATTTTCAGCTGGTACAGGAGAAGGCCACAACCTTAACTCAATTAGTGGTGGTTTGCAAAGACAGGGTTCTTTGACATTGCCAAGGACTCTTAGTCAGAAAACAGTAGATGAAGTTTGGAGGGACTTGATCAAAGAAAGTTGTGGGGCCCATGATGGGAATGGCAATGGTGGTTCATCCATTCCTCAAAGGCAACCAACATTGGGAGAAATGACTTTAGAGGAGTTTTTGGTGAGAGCTGGGGTGGTGAGAGAAGATGTGCCTCAACAACAACAAATTGGAAAACCAAATAACAATGGATGGTTTGGTAACTTTCCTAGACCAAACAATAACAATGGCCTACTTCTTGGTTTCCAACAACCAAATAGAAGTAATGGGAATATGGGTGAGAGGGTGGTGGAGACCAACAATAACTTAGCTCCCAAACAACCTCCTCCTCTATCACTAAACTCAAACCACTCTCACCGACCAACACAACAGCCACCACTTTTTCCAAAGCCTGCAAATTTAGCTTTTGCTTCTCCTATGCATTTGTTGAACAGTGCTCCACTTGCTAGCTCTGGCAGAAGAGGAGGGTTGATCGACCATTCATTGAATGTTGGACTGGTTGGTTTAGCCTCGGGTAATCCAGAGGCTTCTCCCTCAAGGAAAATATCATCAGATGTAATTACAAGAAGTAATGTAGACAACTCTCCACTGTCGCCAGTTCATTATTCAATCAACAGGGGAAGAAAATCTAGTGCTATAGAGAAAGTGGTTGAGAGAAGACAAAGGAGAATGATCAAAAATAGAGAATCAGCAGCCAGATCACGGGCTCGTAAGCAGGCCTACACTTTCGAACTAGAAGCTGAAGTTGCAAAACTTAAGGAAATAAACAGAGAATTGCAAAGAAAACAGGCAGAAATTAAGGAAATGCAGAAAAACAAGGATTCGGACCCTGCAAGCCAGCCAAGGGTAAGTAAAATACAATGCTTGAGAAGGACACTTACAGGACCATGGTAG 1227 0.4377 MNFRNYGDNNPTWDAMHGKTPAANVGSLLRQPSSVYSLTFDEFQSTMGGVGKEFGSMNMDELLKNIWTAEETQALTFSAGTGEGHNLNSISGGLQRQGSLTLPRTLSQKTVDEVWRDLIKESCGAHDGNGNGGSSIPQRQPTLGEMTLEEFLVRAGVVREDVPQQQQIGKPNNNGWFGNFPRPNNNNGLLLGFQQPNRSNGNMGERVVETNNNLAPKQPPPLSLNSNHSHRPTQQPPLFPKPANLAFASPMHLLNSAPLASSGRRGGLIDHSLNVGLVGLASGNPEASPSRKISSDVITRSNVDNSPLSPVHYSINRGRKSSAIEKVVERRQRRMIKNRESAARSRARKQAYTFELEAEVAKLKEINRELQRKQAEIKEMQKNKDSDPASQPRVSKIQCLRRTLTGPW 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02224 408 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 30 408 IPR043452 GO:0003700|GO:0045893
Vian1g02224 408 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 333 348 IPR004827 GO:0003700|GO:0006355
Vian1g02224 408 MobiDBLite consensus disorder prediction 211 238 - -
Vian1g02224 408 Gene3D - 328 386 - -
Vian1g02224 408 MobiDBLite consensus disorder prediction 211 234 - -
Vian1g02224 408 Coils Coil 353 383 - -
Vian1g02224 408 SMART brlzneu 326 390 IPR004827 GO:0003700|GO:0006355
Vian1g02224 408 MobiDBLite consensus disorder prediction 374 408 - -
Vian1g02224 408 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 5 328 385 - -
Vian1g02224 408 CDD bZIP_plant_BZIP46 330 384 - -
Vian1g02224 408 SUPERFAMILY Leucine zipper domain 330 378 IPR046347 GO:0003700|GO:0006355
Vian1g02224 408 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 328 379 IPR004827 GO:0003700|GO:0006355
Vian1g02224 408 Pfam bZIP transcription factor 330 383 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02224 Vian-Chr1 27711125 27713050 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02224 16 408 bZIP Transcription Factor Family AT1G49720 47.115 3.99e-98 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vian1g02224 bZIP_1 2.1e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02224 K14432 - gmx:100776600 598.971