Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02217 ATGTCTTCCTCTTCCTCCTTCTCCCCCGCCACTCTCACCCCTGAGCAAGAACTCTCCGTCATCGTCGCCGCTCTCACCAACGTCGTCGCCGGCTCCACTTCCTCCGACGTCGTCTCCCTCCCGGACTTCCGCCTCCCCAACGCCTCTCAGCCTCTCGCCGGAAACACCTTCTCGCCGCCCACTATGGACACGTGTCGCGAGTGCAACATCGCTGGTTGTTTGGGCTGCAATTTCTTCCCCGAGGAGAAAAAGAAACAGAAGAGGGTCAAGAAGAAATACAGAGGCGTTAGGCAGAGGCCATGGGGTAAGTGGGCGGCCGAGATTCGCGACCCACGCCGTGCGGCACGGGTCTGGCTGGGAACTTTCAACACGGCCGAGGATGCTGCCCGGGCCTACGACAAGGCCGCCATCGAGTTCCGCGGCCCACGGGCCAAGCTCAATTTTCCCTTAGTGGATGAGTCCTTAAGCATGCAGCAGAGCAAGCCAGAGAGGGTTGCAGCTGAAGAACAAATAAAGAACGAGAATCTCAACCAGAGCATGGAAATGGAGACGCTGGCATTCGGAAACAAAGATACTGAATTCTGGGACAGGATTGGCGAAGCTGATTTTCATCAGCTGATGATGATGATGGATTTCACTGGAGATTCTTCCGACTCTGCCACCGGGAACACTCTTAGTTCCTGA 684 0.5643 MSSSSSFSPATLTPEQELSVIVAALTNVVAGSTSSDVVSLPDFRLPNASQPLAGNTFSPPTMDTCRECNIAGCLGCNFFPEEKKKQKRVKKKYRGVRQRPWGKWAAEIRDPRRAARVWLGTFNTAEDAARAYDKAAIEFRGPRAKLNFPLVDESLSMQQSKPERVAAEEQIKNENLNQSMEMETLAFGNKDTEFWDRIGEADFHQLMMMMDFTGDSSDSATGNTLSS 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02217 227 Gene3D AP2/ERF domain 91 151 IPR036955 GO:0003700|GO:0006355
Vian1g02217 227 ProSiteProfiles AP2/ERF domain profile. 92 149 IPR001471 GO:0003700|GO:0006355
Vian1g02217 227 FunFam Ethylene-responsive transcription factor 2 91 150 - -
Vian1g02217 227 CDD AP2 93 149 IPR001471 GO:0003700|GO:0006355
Vian1g02217 227 SUPERFAMILY DNA-binding domain 92 150 IPR016177 GO:0003677
Vian1g02217 227 Pfam AP2 domain 92 141 IPR001471 GO:0003700|GO:0006355
Vian1g02217 227 PRINTS Ethylene responsive element binding protein signature 93 104 IPR001471 GO:0003700|GO:0006355
Vian1g02217 227 PRINTS Ethylene responsive element binding protein signature 115 131 IPR001471 GO:0003700|GO:0006355
Vian1g02217 227 PANTHER DNA-BINDING DOMAIN 67 179 IPR044808 GO:0003700|GO:0009873
Vian1g02217 227 SMART rav1_2 92 155 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02217 Vian-Chr1 27518963 27519646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02217 12 157 AP2-EREBP Transcription Factor Family AT4G34410 48.438 8.52e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian1g02217 AP2 2.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02217 - - gmx:100820426 352.058