LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian1g02207	ATGGGAGTTTGCACATCGAAGCCACAGAAGGCGAACCCTTACGCGCTTCGCGAAGCGGAAGCCGAAGCCGACCCTTCGCAAATCCCAAAAGCCCCACTTAGTCCTGCCGCAGCCGAGAACCACCGCCGGAAAGATGACGTCGCCGCCGGGAAACAGTCTCCGTTCTTCCCGTTCTACAGCCCGAGCCCCGCGCGCTTCCTGAAAAAGTCTCCAGCGCCGGCGGGAGGGAGCAGGAGCGCGGCCTCCACGCCGAGGAGGTTCTTCCGGAGGCCGTTCCCTCCGCCGTCGCCGGCTAAGCACATAAGGGCTGTGCTGACGCGGCGGCAGGGAAAGAAGGCGGCGGCAGCTGCGATATCGGAGGAGGGGGAGGATGGCGGTGGAGCTGCGGCGGATTTGGATAAGAGGTTTGGGTTTTCCAAGGAGTTCACGAGTAGGTTGGAAGTTGGTGAAGAAGTGGGTCGAGGGCATTTTGGGTATACTTGTTCTGCTAGGTTCAAGAAGGGTGAGCTTAAGGGTCAACAAGTGGCTGTTAAGGTCATACCAAAATCAAAGATGACAACAGCAATTGCTATTGAAGATGTGAGAAGGGAGGTGAAAATATTGCGAGCTTTGAATGGACACAGCAATTTGATACAGTTCTATGATGCGTTTGAAGACCAAGATAACGTGTACATTGTAATGGAGTTATGTGAAGGGGGGGAGCTCTTAGATATGATATTATCAAGGGGAGGGAAATACTCAGAAGATGATGCAAAGGCTGTAATGGTGCAGATTCTAAATGTTGTTGCATTTTGTCATCTTCAGGGTGTTGTGCACCGAGACCTTAAGCCAGAGAATTTTTTGTACACTAAAAAGGATGAAAGTTCTGAGTTGAAAGCTATAGACTTTGGGTTATCAGATTTTGTCAGACCAGATGAAAGGCTTAATGATATTGTTGGAAGTGCATATTATGTGGCCCCTGAAGTTCTCCATAGATCTTACAGCACAGAGGCTGATGTGTGGAGTATAGGCGTGATAGCATATATTCTTTTATGTGGTAGTCGTCCATTTTGGGCTCGAACGGAGTCTGGTATTTTCAGGGCAGTTCTGAAAGCTGATCCTAGCTTTGATGAAACACCGTGGCCATCTTTATCTTCAGAAGCAAAGGATTTTGTCAAACGCTTACTGAATAAGGACCCACGGAAGCGGATATCTGCTGCTCAGGCTCTAAGTCATCCTTGGATACGAAATTACAACAATGTAAAAGTTCCACTTGATATTTTAATATTTAAGCTCATGAAGACATATATGAGATCATCGTCCTTACGCAAGGCTGCCTTAAGGGCCTTGTCAAAGACACTGACTGCAGATGAACTCTACTATCTGAGGGAGCAATTTTCACTGCTAGAACCAAGCAAAAATGGCAGCATATCTTTAGAGAATGTTAACAAGGCCTTGATGAAATATGCAACAGATGCCATGAAAGAGTCTCGCATCCCTGACTTTCTTTCCTCGCTGAATTCATTACAATATAGAAGGATGGATTTTGAAGAATTTTGTGCAGCTGCGTTAAGTGTGCATCAACTTGAAGCTCTTGATCGATGGGAACAACATGCTCGCTGTGCCTATGAGCTTTTTGATAAAGATGGAAACAGGGCTATTGTCATTGAAGAGCTTGCTTCAGAACTTGGACTTGGTCCCTCTATCCCTGTTCATGTTGTTCTTCACGATTGGATACGCCACACTGATGGAAAATTAAGCTTTCTTGGGTTTGTGAAACTATTACACGGTGTATCTAGCCGAAGCCTTGCGAAGGTTCAATAA	1803	0.467	MGVCTSKPQKANPYALREAEAEADPSQIPKAPLSPAAAENHRRKDDVAAGKQSPFFPFYSPSPARFLKKSPAPAGGSRSAASTPRRFFRRPFPPPSPAKHIRAVLTRRQGKKAAAAAISEEGEDGGGAAADLDKRFGFSKEFTSRLEVGEEVGRGHFGYTCSARFKKGELKGQQVAVKVIPKSKMTTAIAIEDVRREVKILRALNGHSNLIQFYDAFEDQDNVYIVMELCEGGELLDMILSRGGKYSEDDAKAVMVQILNVVAFCHLQGVVHRDLKPENFLYTKKDESSELKAIDFGLSDFVRPDERLNDIVGSAYYVAPEVLHRSYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDETPWPSLSSEAKDFVKRLLNKDPRKRISAAQALSHPWIRNYNNVKVPLDILIFKLMKTYMRSSSLRKAALRALSKTLTADELYYLREQFSLLEPSKNGSISLENVNKALMKYATDAMKESRIPDFLSSLNSLQYRRMDFEEFCAAALSVHQLEALDRWEQHARCAYELFDKDGNRAIVIEELASELGLGPSIPVHVVLHDWIRHTDGKLSFLGFVKLLHGVSSRSLAKVQ	600

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian1g02207	600	Gene3D	-	426	517	-	-
	Vian1g02207	600	MobiDBLite	consensus disorder prediction	1	98	-	-
	Vian1g02207	600	Gene3D	Transferase(Phosphotransferase) domain 1	235	420	-	-
	Vian1g02207	600	Pfam	Protein kinase domain	147	408	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian1g02207	600	SUPERFAMILY	Protein kinase-like (PK-like)	142	449	IPR011009	-
	Vian1g02207	600	ProSiteProfiles	Protein kinase domain profile.	146	408	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian1g02207	600	ProSitePatterns	Protein kinases ATP-binding region signature.	152	178	IPR017441	GO:0005524
	Vian1g02207	600	FunFam	Calcium-dependent protein kinase SK5	318	413	-	-
	Vian1g02207	600	CDD	STKc_CAMK	147	407	-	-
	Vian1g02207	600	SUPERFAMILY	EF-hand	436	590	IPR011992	-
	Vian1g02207	600	Gene3D	-	433	587	-	-
	Vian1g02207	600	FunFam	CDPK-related kinase 3	138	310	-	-
	Vian1g02207	600	FunFam	CDPK-related kinase 1	139	234	-	-
	Vian1g02207	600	FunFam	CDPK-related kinase 1	444	517	-	-
	Vian1g02207	600	Gene3D	Phosphorylase Kinase; domain 1	148	234	-	-
	Vian1g02207	600	PANTHER	SERINE/THREONINE-PROTEIN KINASE	132	575	-	-
	Vian1g02207	600	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	270	282	IPR008271	GO:0004672\|GO:0006468
	Vian1g02207	600	SMART	serkin_6	146	408	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian1g02207	Vian-Chr1	27346980	27351067	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian1g02207	1	596	EF-hand Containing Proteins	AT3G50530	71.136	0.0	932

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Vian1g02207		Pkinase	1.8e-72	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian1g02207	-		K00924	gmx:100798913	1070.07