Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02200 ATGGGGGATCGGGGTTCGAGCGCCGCGAAACCGATTTGGATGAAGCAAGCGGAGGAGGCGAAGCTGAAGAGCGAGGCGGAGAAGACCGCGGCGGCGAAGGCGGCTTTCGAGGCCACGTTCAAGGGTTTGGAGAAGAATCGGGAGAAGGGTGGTGGTGTCGTTCAATCGGACAGCGAGTCGGAGGAGTACGAGGACCTGGCTCATAAGCCCATTGGGCCCGTCGATCCCTCCAAGTGCACTGCCGCGGGGACCGGGATCGCCGGTGGAACGGCGTGTGCTCCGTCATCGTTTGTGGTGGTTGCTAAGGACGCCGATGAGAGGAAGGTTTCCAATGGGGGTGCGCAAATCAAGGTGAGGGTGACGCCCGGGTTGGGTGTTGGAGGGTCTGAACAAGAAGGAATGGTGAAGGATATGGGTGATGGAACTTACACTGTGACATATGTGGTGCCCAAGCGAGGGAATTATATGGTCAGTGTTGAGTGTAATGGGAGGCCTATCATGGGGAGTCCCTTTCCTGTGTTTTTCAGTGCAGCAGGTAATGGTAGTGGAGGGCTGCTGGGTTTAGCTCCTGCATCTACATTTCCAAACCTGGTTAATCAAACTATGCCCAACATGCCAAATTACTCTGGATCAGTTTCAGGGGCATTCCCTGGATTGTTGGGAATGATTCCAGGGGTTGTTGCTGGAGCTTCTGGGGGTGCTATTTTGCCTGGCATTGGTGCCTCACTTGGGGAAGTTTGTCGTGATTACCTTAATGGGCGTTGTGCAAAAGTAGATTGTAAGTTGAATCACCCACCTCATAATTTGCTAATGACTGCCTTAGCTGCGACAACCTCAATGGGAACACTTAGCCAAGCTCCTATGGCACCTTCTGCTGCTGCAATGGCTGCAGCTCAGGCAATAGTTGCTGCCCAAGCCCTTCAAGCGCATGCAGCTCAGGTGCAAGCTCAGTCTGCAAAAGATTCTTCTGGTTCTCCTGAAAAGTCTAGTAAAGATGATGCATTGAAGAAAACCCTTCAAGTTAGCAATCTTAGCCCTCTTCTCACTGTGGAACAGCTAAAGCAACTCTTTGCATTCTGTGGCACTGTAGTTGAATGTACGATCACTGATTCAAAGCATTTTGCTTATATAGAGTACTCAAAGCCTGAAGAGGCAACTGCTGCTCTGGCGTTAAACAACATAGATGTTGGGGGGCGCCCTTTGAATGTTGAAATGGCAAAATCACTTCCACAAAAGCCATCGGTGGTGAATTCTTCACTTGCTTCGTCATCTCTTCCTCTGATGATGCAGCAAGCTGTTGCAATGCAACAGATGCAATTCCAGCAAGCATTGTTGATGCAACAAACCATGACTGCACAGCAGGCTGCTAATCGAGCTGCAACCATGAAATCTGCCACAGAGCTAGCTGCAGCCCGAGCGGCAGAAATAAGCAAGAAATTGAATCCTGATGGACTTGAAAGTGAAGCAAAAGAGGCGAAGCAAAAATCCAGATCACCGTCTCCCCCTCGTGGAAGATCTCGATCAAAATCAAGATCTCCTATCAATTACCGAAGAAGGAGAAGATCTCGCTCTTATTCACCTGTGCGTCACTCTAGGGATCATCGTTCTCGGTCACCATTGAGGTCACATCATTACTCGAGCTATGAAAGGGAAAGGCGCTATAGAGATATTAGGGAACATAGTGATAGGTACAGAAAACGAGATTTGGATAGATCACTTGATTACCGTTTATCTGCTTCTAGAAGGAACAAAAGTAGGAGTGTTAGTCCTCATACACGGAAATCATCTGTTTCTCCAAAACATCATAGAGACACTTCACCTCATAGAGGAAGGAAACAGTCACGTGCTGATTCAGGCTCTCCAAGTCGTCACAGAGGTAGGTCTTCTCCAAAGACTGATGAAAAAAAATTAAGAAACAGAAGGCGCTCAAGGTCAAGATCATCAGACGATAATAGGCTTCACTATAGCAAAAATGAAGAAATCTTTGATGGAAAATCTAAACAAAAAGAGAGAATTCGTTCCAGGTCAGTGTCTGTGGATGAAAAGCCTCACAGAAGGAGCCGGTCATCACCGAGAAAAGTGGATGAAAGTCGATCCAGATACAAAAAACGCTCAAGGTCTAAATCTGTGGATGATAAGCATGACTCCCCCGAGAGATTGGATAAAAGCAGATATAGAAGATTGAGGCATAATGATAAAAGGCACTCTAGGTCAAGATCTACAGAAAATAGGGATCAGTCTGATTTTAGGGTGGGTGAAAGCAAAAATGAAAAGTCAAAACATCGTGATTCTACAAGGGGCAGGTCAAAATCTGTTGAAGGGAAGCATCGCTCTAAAGATAAATCTGCTGAAAATAGAGATAAGAAATCAAAACATCGAGATAGAAGGCGTTCAAGGTCAATATCATTAGAAGGTGAGCTGGAGAAAAGAGGCACTTCACCCCATATTAATTTGGATGAGAGAAATTTTGAACTGAAACAGTCCAGTTCAAAGTTCCCTGAAGGCAAGCATCACTCCAGTGATAAATATGCAAATAGAGATGAAAAATCAGATCATCAAAAGAAAACCCCACCTAAATCAAAATCAAAACAATTTGATGGGAGTGGGTCCTTCCAAGGAAATTTCGAGGATTATGAATCAAAGGGGAAATCACAATCTGATTCTGGATCTGCAGAAGTTAAGCATAATTTGAATGATGGAGAAGATACTACCTGTGAAGAAAACTCAAAACTTTCTGGAGAAGGCAAGGACTCAAGTACCCTTAATGATACTGAGATGCTGACCTCAGTGAATGGTAACTACAAGTTAGAAGGGTCAAATGAAGCTGATGATAACCCAGGATGGATATGCGTGGAAGAAGTGGGAAATGTAAAATATTAA 2880 0.4552 MGDRGSSAAKPIWMKQAEEAKLKSEAEKTAAAKAAFEATFKGLEKNREKGGGVVQSDSESEEYEDLAHKPIGPVDPSKCTAAGTGIAGGTACAPSSFVVVAKDADERKVSNGGAQIKVRVTPGLGVGGSEQEGMVKDMGDGTYTVTYVVPKRGNYMVSVECNGRPIMGSPFPVFFSAAGNGSGGLLGLAPASTFPNLVNQTMPNMPNYSGSVSGAFPGLLGMIPGVVAGASGGAILPGIGASLGEVCRDYLNGRCAKVDCKLNHPPHNLLMTALAATTSMGTLSQAPMAPSAAAMAAAQAIVAAQALQAHAAQVQAQSAKDSSGSPEKSSKDDALKKTLQVSNLSPLLTVEQLKQLFAFCGTVVECTITDSKHFAYIEYSKPEEATAALALNNIDVGGRPLNVEMAKSLPQKPSVVNSSLASSSLPLMMQQAVAMQQMQFQQALLMQQTMTAQQAANRAATMKSATELAAARAAEISKKLNPDGLESEAKEAKQKSRSPSPPRGRSRSKSRSPINYRRRRRSRSYSPVRHSRDHRSRSPLRSHHYSSYERERRYRDIREHSDRYRKRDLDRSLDYRLSASRRNKSRSVSPHTRKSSVSPKHHRDTSPHRGRKQSRADSGSPSRHRGRSSPKTDEKKLRNRRRSRSRSSDDNRLHYSKNEEIFDGKSKQKERIRSRSVSVDEKPHRRSRSSPRKVDESRSRYKKRSRSKSVDDKHDSPERLDKSRYRRLRHNDKRHSRSRSTENRDQSDFRVGESKNEKSKHRDSTRGRSKSVEGKHRSKDKSAENRDKKSKHRDRRRSRSISLEGELEKRGTSPHINLDERNFELKQSSSKFPEGKHHSSDKYANRDEKSDHQKKTPPKSKSKQFDGSGSFQGNFEDYESKGKSQSDSGSAEVKHNLNDGEDTTCEENSKLSGEGKDSSTLNDTEMLTSVNGNYKLEGSNEADDNPGWICVEEVGNVKY 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02200 959 MobiDBLite consensus disorder prediction 643 725 - -
Vian1g02200 959 MobiDBLite consensus disorder prediction 894 913 - -
Vian1g02200 959 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 280 666 - -
Vian1g02200 959 MobiDBLite consensus disorder prediction 862 893 - -
Vian1g02200 959 MobiDBLite consensus disorder prediction 479 551 - -
Vian1g02200 959 MobiDBLite consensus disorder prediction 479 498 - -
Vian1g02200 959 MobiDBLite consensus disorder prediction 575 926 - -
Vian1g02200 959 MobiDBLite consensus disorder prediction 735 789 - -
Vian1g02200 959 MobiDBLite consensus disorder prediction 500 539 - -
Vian1g02200 959 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 341 401 IPR000504 GO:0003723
Vian1g02200 959 Gene3D - 297 417 IPR012677 -
Vian1g02200 959 Pfam Filamin/ABP280 repeat 73 171 IPR017868 -
Vian1g02200 959 MobiDBLite consensus disorder prediction 610 636 - -
Vian1g02200 959 MobiDBLite consensus disorder prediction 797 861 - -
Vian1g02200 959 CDD RRM_SF 339 404 - -
Vian1g02200 959 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 337 408 IPR000504 GO:0003723
Vian1g02200 959 SUPERFAMILY RNA-binding domain, RBD 321 414 IPR035979 GO:0003676
Vian1g02200 959 SMART flmn_3 75 178 IPR001298 GO:0005515
Vian1g02200 959 Gene3D Immunoglobulins 73 180 IPR013783 -
Vian1g02200 959 ProSiteProfiles Zinc finger C3H1-type profile. 246 267 IPR000571 GO:0046872
Vian1g02200 959 SMART rrm1_1 338 404 IPR000504 GO:0003723
Vian1g02200 959 ProSiteProfiles Filamin/ABP280 repeat profile. 71 175 IPR017868 -
Vian1g02200 959 SUPERFAMILY E set domains 73 173 IPR014756 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02200 324 407 Eukaryotic Initiation Factors Gene Family AT2G23350 35.556 9.86e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02200 - - gmx:100790138 1340.87