Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02198 ATGCGGTGTAATGGTTTAACCGTACACGGAAGCAACCACCGTGGCTTCTGCGTCCCCACCGTGTCTCCGGTGTTCTTGAGACCCACCCGACCCGTCACCCGTATCGCGTTTCCCAAGGCTAGCCTGAAGAACGAGGGACTAGTGATGGAGTTAAGCTTCTACGAGCTTCTGGGTATACCCGAATCCGGTTCCTTGATGGAGATCAAGAACGCGTACAAGCAACTCGCCCGAAAGTACCACCCGGATGTGTCTCCTCCGGGTCGGGTGGAGGAATACACCAAACGGTTTATTCAGGTGCAGGAAGCCTACGAAACTCTCTCCGATCCTTCCCGAAGAGCCATGTACGATCACGACATGGCTAAAGGTATTAACTTCGCTTTCAACGCCCGCAGACGCCGCAATTACCACGATCAGGTGGTGGAACAAAAAACTGAATGGAAATCTCGGTGGCAATCTCAACTGTCGGAGCTGAAGAGAAGAAGTAACAGCAAGGAGGGTGGAGGGAATATGTCATGGGCAGCGAGAATGCGCCAGCAGAGGGATGAATTGGCTAATGAATCATGA 564 0.5266 MRCNGLTVHGSNHRGFCVPTVSPVFLRPTRPVTRIAFPKASLKNEGLVMELSFYELLGIPESGSLMEIKNAYKQLARKYHPDVSPPGRVEEYTKRFIQVQEAYETLSDPSRRAMYDHDMAKGINFAFNARRRRNYHDQVVEQKTEWKSRWQSQLSELKRRSNSKEGGGNMSWAARMRQQRDELANES 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02198 187 ProSiteProfiles dnaJ domain profile. 52 119 IPR001623 -
Vian1g02198 187 ProSitePatterns Nt-dnaJ domain signature. 96 115 IPR018253 -
Vian1g02198 187 FunFam Chaperone protein dnaJ 20, chloroplastic 41 148 - -
Vian1g02198 187 CDD DnaJ 53 108 IPR001623 -
Vian1g02198 187 PRINTS DnaJ domain signature 54 72 IPR001623 -
Vian1g02198 187 PRINTS DnaJ domain signature 72 87 IPR001623 -
Vian1g02198 187 PRINTS DnaJ domain signature 91 111 IPR001623 -
Vian1g02198 187 Pfam DnaJ domain 53 116 IPR001623 -
Vian1g02198 187 SUPERFAMILY Chaperone J-domain 51 123 IPR036869 -
Vian1g02198 187 SMART dnaj_3 51 111 IPR001623 -
Vian1g02198 187 Gene3D DnaJ domain 39 163 IPR036869 -
Vian1g02198 187 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 49 182 - -
Vian1g02198 187 MobiDBLite consensus disorder prediction 148 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02198 Vian-Chr1 27171157 27173547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02198 54 116 C2H2 Transcription Factor Family AT1G74250 45.455 7.35e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02198 - - gmx:100101903 317.39