Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02185 ATGGACTTCTCGAAGAAGCGCAAGACCGAAGAGAACGGCGATACTGATTCTCTGTCGTCACCACCCTCCCAAGCATTCCCCACCGCCACCGTCCCCACAACCGCTCCCCTGGCAGCGGAAGACATCCGCAAGATCTTGCGTCCGTTTTCCCAGGAACAGCTCCTCGACCTCCTCCAATCAGCGTCGCTACGTCACTCCGATGTCCTCGACGCCGTGCGCACCGTCGCGGACCGCGACTCTACTCTCCGTAAGCTTTTCGTTCGCGGACTTGCCGGCGAAACCACCAGCGAGACCCTGCGCAGCGTGTTCTCCACGTTCGGCGAACTCGACGAGGCCATCGTGATCTTCGACAAGGCCACGGGACGCTCCAAGGGCTATGGCTTCGTGGTCTTTCGCCACGTGGATGGCGCCATCCTCGCGCTGAAGGACCCAAGCAAGAAGATCGATGGTCGCATGACGGTAACGCAACTCGCCGCAGCTGGTGGACCTGGGGGCTCCGGCGACGTATCAGCGAGGAAGGTTTTCGTCGGGAACGTGCCGTTCGAGATTTCCTCGGATAAACTACTGAGCGAATTCCTCAAGTTCGGAGAGGTCGAGGAAGGGCCTCTAGGGTTTGACAAATCGAGCGGCAAATCGAGGGGCTTCGCTTTTTTCGTTTATAAGACGGAGGAAGGTGCGAGGGCTTCGTTGGTGGAACCTGTTAAGACCATTGATGGGCACCAAGTGATTTGCAAATTGGCTGTGGATAGCAAAAAGACGAAACCCTTTGGAGGGGATCAACATCAGCATCAACACACGCAGCATCAGCAGCAACAACAGCAACATCCGCAGCAACAGATGCAACAACAAGGTCCTATGATGATACCTCAGTATGGTGGATATGGTGGGAATGGCTATGGAATACAGCACTCGGTGCCACAGTATAACAATCCGGTTCAGGTTTCTGGTGGTGGTGGGTATGGCCACGGAATTGGTGGTGGATATGGTAATTCGCAGATGGGTGGACCGGTTTCCGGTGACTACGGAACTAGACTGCCTCCCAATTCTGGTGGGGGGTTCGCTGAAGGCTCCCAGTATGGCTACCCTGCTTCTTCCACGCTTCCACCACAGCAGCAAGTGCCTATGCCGAGACCTCCTCCCGGAGGAATGTACCAAGGCGTGCCACCCTATTATTGA 1176 0.5621 MDFSKKRKTEENGDTDSLSSPPSQAFPTATVPTTAPLAAEDIRKILRPFSQEQLLDLLQSASLRHSDVLDAVRTVADRDSTLRKLFVRGLAGETTSETLRSVFSTFGELDEAIVIFDKATGRSKGYGFVVFRHVDGAILALKDPSKKIDGRMTVTQLAAAGGPGGSGDVSARKVFVGNVPFEISSDKLLSEFLKFGEVEEGPLGFDKSSGKSRGFAFFVYKTEEGARASLVEPVKTIDGHQVICKLAVDSKKTKPFGGDQHQHQHTQHQQQQQQHPQQQMQQQGPMMIPQYGGYGGNGYGIQHSVPQYNNPVQVSGGGGYGHGIGGGYGNSQMGGPVSGDYGTRLPPNSGGGFAEGSQYGYPASSTLPPQQQVPMPRPPPGGMYQGVPPYY 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02185 391 SUPERFAMILY RNA-binding domain, RBD 169 262 IPR035979 GO:0003676
Vian1g02185 391 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 174 240 IPR000504 GO:0003723
Vian1g02185 391 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 151 IPR000504 GO:0003723
Vian1g02185 391 Gene3D - 166 286 IPR012677 -
Vian1g02185 391 MobiDBLite consensus disorder prediction 352 391 - -
Vian1g02185 391 MobiDBLite consensus disorder prediction 15 30 - -
Vian1g02185 391 MobiDBLite consensus disorder prediction 262 286 - -
Vian1g02185 391 Gene3D - 74 161 IPR012677 -
Vian1g02185 391 MobiDBLite consensus disorder prediction 369 391 - -
Vian1g02185 391 SUPERFAMILY RNA-binding domain, RBD 76 162 IPR035979 GO:0003676
Vian1g02185 391 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 160 IPR000504 GO:0003723
Vian1g02185 391 SMART rrm1_1 84 156 IPR000504 GO:0003723
Vian1g02185 391 SMART rrm1_1 173 245 IPR000504 GO:0003723
Vian1g02185 391 PANTHER GEO13361P1-RELATED 66 305 - -
Vian1g02185 391 FunFam UBP1-associated protein 2C isoform A 66 168 - -
Vian1g02185 391 MobiDBLite consensus disorder prediction 253 295 - -
Vian1g02185 391 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 172 253 IPR000504 GO:0003723
Vian1g02185 391 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02185 Vian-Chr1 26898768 26899943 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02185 155 247 C2H2 Transcription Factor Family AT2G19380 31.183 4.13e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02185 K12741 - gmx:100816590 541.962