Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02183 ATGGTTCACTCCTTCTATGAGAAAAGCTCTCCTTCTGGCTCTGATATTTCGGGGTTGTTCAATCCCACTTTGCAAAGTGTTGGAGCTTCCAATGGTGAAGTTGCGAAGGGTGGCTTGTCATCGTCACATTCTTTGGTTTATGAGAGTGAGAAGGGAGAGCTGGTGAAGTGCTCTTCAGCTGCAAAGGTAGGGAAGAATGAGATTTGTGAGGCCAAAGCTTTGGCTGCTTTGAAGAATCACAGTGAAGCAGAGAGAAGAAGGAGGGAGAGAATAAACGGTCATCTTGCAACACTACGTGGCCTTGTACCATCCACTGAAAAGATGGATAAAGCCACTTTACTGGCTGAAGTGATAAAGCAAGTGAAGGAATTGAAGAAAACTGCAGTAGAAGTAAGCAAGGGTTTTCCAATCCCAATGGATGCAGATGAAGTGAAAGTTGAACCATGTGATGGATCCATGTCTTACAGTGCAACTATTTGCTGTGATTTTCGACCTGAAATAATATCTGACCTAAGACAAACCCTTGATTCTCTTCCACTGCATCTAGAGAAGGCAGAAATTTCAACTTTGGCAGGAAGAATGAAGAATGTATTCGTCTTCACATGTTGCAAAGGGAACATTGATATTCATACTGAAGCATGCCAAGCTCTTGCAAGAACTGTTCATCAGGCACTGTGTTCTGTACTGGAAAAGGCTTCTGCCTCACTTGAGTTCTCACCCAGAACATCACATGCTAACAAGAGGAGAAGACTATGCTTTATTGAAACATCCACTTCCTCATGCAACCATGGATCTTGTTCGTGTTGA 807 0.4312 MVHSFYEKSSPSGSDISGLFNPTLQSVGASNGEVAKGGLSSSHSLVYESEKGELVKCSSAAKVGKNEICEAKALAALKNHSEAERRRRERINGHLATLRGLVPSTEKMDKATLLAEVIKQVKELKKTAVEVSKGFPIPMDADEVKVEPCDGSMSYSATICCDFRPEIISDLRQTLDSLPLHLEKAEISTLAGRMKNVFVFTCCKGNIDIHTEACQALARTVHQALCSVLEKASASLEFSPRTSHANKRRRLCFIETSTSSCNHGSCSC 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02183 268 Gene3D - 72 133 IPR036638 GO:0046983
Vian1g02183 268 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 79 128 IPR036638 GO:0046983
Vian1g02183 268 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 124 IPR011598 GO:0046983
Vian1g02183 268 Pfam Helix-loop-helix DNA-binding domain 79 124 IPR011598 GO:0046983
Vian1g02183 268 PANTHER TRANSCRIPTION FACTOR BHLH30 35 255 IPR045847 GO:0003700|GO:0006355
Vian1g02183 268 SMART finulus 81 130 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02183 Vian-Chr1 26881164 26883960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02183 61 251 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 43.939 4.04e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian1g02183 HLH 4.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02183 - - gmx:100804756 443.736