LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian1g02180	ATGTGTACACTCTTCAACATTCTTCTTTTGTTTCTCACACTTTCTTCTTCTTCTTGTTCTTCTTCTTCTTCACACCCTCGCCGTGTTCTTCACCAACCCCTCTTCCCCAGAATCTCTATCCCTCCAACACATCCTCCAGCTTTATCCCCTCAACCCCAAAAGCAACACCATTTACCCAAGTTTCCATTTTCATCTTCTTCATCGTTCTCGCCTCCACCACCGCAAAAACCTTTCTTTCCTTCTTACCATTCCCCTCCACTCCCTCCTTCCCCCACCGTCGTTGCTACTTTCCCCGCTAACATCTCCTCCCTCCTCCTCCCCCACCCCTACTCCCACCACCACCGCTCCGCCGCCGCCCTCGCCGTCTCCCTCTCCCTCTTCTCCCTCGCCCTCCTCGCTGCCGCCGCGTTCTTTCTCCTCCACCGCCGCCGCGCTAACAGGACTTCCTCCTCCGACGCCACCCATGACGACGACGATGAGAAAGGCTCGAGATCCGACAGCCTCCGCCTGTTCCCGCCGAACGCCGCCGCCTCCGACGGCGTCGATAGAAAACCCCGCGGAAAGTCCTCCCCGACGTCGGAGCTGCTCTACCTCGGCACGGTAGCGAACTCGGTGAACTCAACGCTAGACACAAGCTCAAGCCCCCACGACGACGGTTTCCGGCCACCGTATCAAAAACTCGGCGACTCGCCGGAACTGAACCCACTCCCACCTTTGCCACGTCACAAATTCAAACCATGGATGAATGAAGATGACGGTGATAAAAATGTGAAAGAAAAAGTGGAACAACAAGAAGAGGCAGAAAAAGAAGAAGAAGATGAACAGTTTTTTTCTCCAAGAAGTTCTTCTGGTGGGAACAATCAACATAGTCCTCCTTCTCCTTTAGCCGTTGCTGCTTCAAGTTCGCACGCGAATAATAAAATCAGTTCTACAAGCTTCACTTCTCGAACCCCTTCGTACCCTCGTTCCAATTCCCTCTCTTTCTCTCGTTCCCCGTCTCTTAATTTCAGCCCCGCAAGTGTTAAATCACTCCCTCCGCACAACCATGCTTCTCCTTCTTTCTCTTCATCATCTTCTTCTCCCAGGGAAGAATGGCATGTTCCTTCAAGGGACCAAAATTCTCCCGCGAGAAATTTACCTCCTCCACCACCGCCGCCACCTCCGCCTCCTCGGATTTGGGAAGCTCCAGTTTCTGTTAGGAAAGTGAGCGAGGAGACACCGAAGCCAAAGTTGAAAGCTTTACATTGGGATAAAGTGAAGGCCAGCTCGGACAGGGTCATGGTTTGGGACCAGTTGAGACCCAGTTCTTTTCAGTTGAACGAGGATATGATTGAAACGCTTTTTATGGTAAATAATTCCAAGGAGGGTGTCGGGGTTGCGATTAGAGACAATGCTCGGCGCCACATAGTTCATTCTGCTTCTCCCATGCCCATGGAGAATAGGGTCCTTGACCCTAAGAAGTCTCAGAACATTGCCATTTTGCTTAGGGCTCTCAATGTTACCATTGATGAAGTTTGTGATGCCCTCAGAGAAGGAAATTGTGATACGTTGGGAACAGAACTTCTTGAAAGTTTGTTAAAGATGGCTCCGACTAAAGATGAAGAATCTAAGCTGAAGGAATTTCAAGATGAATCGCCCTTCAAGCTTGGCCCAGCTGAGAAATTTCTCAAAGTTGTTCTTGATATACCTTTCGCTTTTAAGAGAGTGGATGCTATGCTCTACATTGCTAATTTTGATTCAGAATTAGAATACCTTAAAAAGTCCTTTGAAACTCTGGAGGTGGCCTGTGAGGAATTAAAGAATAGTCGAATGTTTTTGAAGATACTTGAAGCAGTGTTAAGAACTGGAAATAGAATGAATGTTGGCACCAATCGTGGTGATGCTCATGCGTTCAAACTGGACACACTTTTGAAGTTAGCTGATATTAAAGGAACTGATGGAAAGACTTCTCTGTTGCATTTTGTTGTACAGGAAATTGTCAGAACCGAGGGTTCTCATGTTTCTGGTTCTGACAATGTCCAGCAATACAGTCTTCAAGATGAGGTTGACTTGAAAAAGCTTGGTCTGCAAATTGTTTCGGGACTTAGCGGGGAGCTCACCAATGTTAAAAAAGCAGCTGCTATGGATTCAGACATGCTCAGTAGTGATGTTGCCAAACTTGCCAGAGGAATTGACAAAGTTATGCAAGTAGTGAAATTGAATGAGGAGTCTCCTTTGAAAGAAACTAACCAAAAGTTTTCGGAGGCGATGAAAGGTTTCTTGGAAAGGGGAGAGCAAGAGATTTCAACAATCCAGGCCCAAGAGAAAAATTGTTTCTCTTTGGTGAAGGAGATAACTGAGTATTTCCATGGAAATTCGGCAAAGGAAGAAGCTCATCCATTTAGAATTTTTATGGTTGTGAGGGATTTCCTTTCTATTCTAGATGGTGTTTGCAAGGAAGTTGGTAAAGTGAATGAGAGAACTTTGGTTGGTTCGCGTCATTCTGTAATGCCTGCAAATCCTATAATGCAATCCTTTTTTCCTGAGATTATTGGTAAGCAGCCATCCGATTCCTCCGAATCTGACTAA	2568	0.4681	MCTLFNILLLFLTLSSSSCSSSSSHPRRVLHQPLFPRISIPPTHPPALSPQPQKQHHLPKFPFSSSSSFSPPPPQKPFFPSYHSPPLPPSPTVVATFPANISSLLLPHPYSHHHRSAAALAVSLSLFSLALLAAAAFFLLHRRRANRTSSSDATHDDDDEKGSRSDSLRLFPPNAAASDGVDRKPRGKSSPTSELLYLGTVANSVNSTLDTSSSPHDDGFRPPYQKLGDSPELNPLPPLPRHKFKPWMNEDDGDKNVKEKVEQQEEAEKEEEDEQFFSPRSSSGGNNQHSPPSPLAVAASSSHANNKISSTSFTSRTPSYPRSNSLSFSRSPSLNFSPASVKSLPPHNHASPSFSSSSSSPREEWHVPSRDQNSPARNLPPPPPPPPPPPRIWEAPVSVRKVSEETPKPKLKALHWDKVKASSDRVMVWDQLRPSSFQLNEDMIETLFMVNNSKEGVGVAIRDNARRHIVHSASPMPMENRVLDPKKSQNIAILLRALNVTIDEVCDALREGNCDTLGTELLESLLKMAPTKDEESKLKEFQDESPFKLGPAEKFLKVVLDIPFAFKRVDAMLYIANFDSELEYLKKSFETLEVACEELKNSRMFLKILEAVLRTGNRMNVGTNRGDAHAFKLDTLLKLADIKGTDGKTSLLHFVVQEIVRTEGSHVSGSDNVQQYSLQDEVDLKKLGLQIVSGLSGELTNVKKAAAMDSDMLSSDVAKLARGIDKVMQVVKLNEESPLKETNQKFSEAMKGFLERGEQEISTIQAQEKNCFSLVKEITEYFHGNSAKEEAHPFRIFMVVRDFLSILDGVCKEVGKVNERTLVGSRHSVMPANPIMQSFFPEIIGKQPSDSSESD	855

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian1g02180	855	Coils	Coil	254	274	-	-
	Vian1g02180	855	Pfam	Formin Homology 2 Domain	404	807	IPR015425	-
	Vian1g02180	855	MobiDBLite	consensus disorder prediction	278	363	-	-
	Vian1g02180	855	MobiDBLite	consensus disorder prediction	375	394	-	-
	Vian1g02180	855	MobiDBLite	consensus disorder prediction	207	394	-	-
	Vian1g02180	855	MobiDBLite	consensus disorder prediction	146	194	-	-
	Vian1g02180	855	MobiDBLite	consensus disorder prediction	66	83	-	-
	Vian1g02180	855	Gene3D	Formin, FH2 domain	407	829	IPR042201	-
	Vian1g02180	855	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	401	833	IPR015425	-
	Vian1g02180	855	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	380	820	-	-
	Vian1g02180	855	MobiDBLite	consensus disorder prediction	41	83	-	-
	Vian1g02180	855	MobiDBLite	consensus disorder prediction	146	166	-	-
	Vian1g02180	855	MobiDBLite	consensus disorder prediction	244	265	-	-
	Vian1g02180	855	SMART	it6_source	401	822	IPR015425	-
	Vian1g02180	855	Coils	Coil	582	602	-	-
	Vian1g02180	855	PANTHER	FORMIN-RELATED	10	846	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian1g02180	Vian-Chr1	26854285	26857893	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian1g02180	375	847	FH2 protein (formin) Gene Family	AT3G25500	64.644	0.0	609

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian1g02180	-		-	vun:114175163	1443.33