Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02162 ATGGGAAAGAAGGGGAGTTGGTTTTCTGCAATCAAAAGGGTTTTCACTCACCACTCCAAGGGGAAGCAGGATGCGGATAACAAAGGCACAAAAGAAAAGAAGAAAAGTTTAGGAAAATTAAAGCATGGAGAGACCAATTCATTCATCCCCCTCTTCAGAGAGCCAAGTAGTATTGAGAAAATCTTTGGGGACTTTGAAAGGGAGCAACAACTACTGGGGTTAAGGCCTGCCACTCCTCCTGAGAGACCCAAAACTCCACCTTATGTCCCTCCAAGAGCTCCTTCTCCTAGGCCTCCTTCTCCAAGGGCTCCTTCTCCAAGGGCTGCTTCTCCCAGGGCTTCTTCCCCGCGAGTTACCTCTCCCAAAGCTGCATCTTTCCGGAATTCTCATCACCACAAGGAGGTTGGCTACAGACCTGAACCAACTTTGAGGCACCAGAATGCCTCAGCTACTAAGATCCAGGCTGTTTACAGAGGTTATATGGCCAGGAGGAGTTTTAGAGCACTAAAGGGTCTGGTGAGGCTCCAAGGAGTAGTAAGAGGACAGAATGTGAAGAGACAGACAGTAAATGCCATGAAACACATGCAACTCTTAGTGCGAGTTCAATCTCAGATTCAGTCTCGAAGGATCCAGATGTTGGAAAACCAGGCACGATATCAAGCTGAGTTCAAGAATGATAAGGATGCAGCAAGTATCTTGGGCAAACTCACTTCTGAAGCAGAAGAGTGGGATGATAGCTTACTTACCAAAGAGGAAGTAGAGGCAAGGTTGCAGAGGAAGGTAGAAGCAATCATCAAAAGAGAAAGATCAATGGCATTTGCATATTCACATCAGCTATGGAAAGCCACTCCAAAATCAACACACACCCCAGTGGCAGATACAAGATCAGGTGGATTTCCTTGGTGGTGGAACTGGTTGGAAAGACAAGCACCTGCACCTGCAGCAGCAACTCCACAAGAAAGACAAGTGCTGAAGAATTTTCAACTGACACCTCCAAGACCATACTCAGAGCAAAAGACTAGTCCAAGACCCGGATCCAGCACTCAAAGACAACAGCAGCCTCATTTTGCTTTTGATAACATGGACACTCCCACACCAAAGTCCACAAAATCAACCATAGTGACATCTTCAAAACCGGTACGAACACCTCCCTATAGAACTCCTCAGGCAAACAGTTCAGGCTCTGGCTCTAAATTTCTGAGACCGAGGGGTGTGGGAGCGAATTCACCCTTTGATGTGCCACTGAAGGATGATGAAAGTCTCACAAGCTGCCCACCATTTTCAGTGCCAAACTACATGGCTCCAACCCTCTCTGCCAAGGCCAAAGTACGTGCCAGTAGTAATCCTAGAGAAAGGCTTGGTGGAACTCCAACAAGTACTGATTCAAAGAGGAGACTCTCATTCCCATTGTCGCAAGGAATAGGGTCTTTCAAGTGGTCTAAAGGGTTCTCAAGCAAGGATCAAAGGGTGCAAGATAAATTTCAGCCACTTGACTCTATAGGAAATGTGAGTGTGGATTCAACAGTGTCTTTGCCCGCAAGGGTGGGAAGAAAGCCTTTTACAAGATTTGTGTGA 1575 0.4667 MGKKGSWFSAIKRVFTHHSKGKQDADNKGTKEKKKSLGKLKHGETNSFIPLFREPSSIEKIFGDFEREQQLLGLRPATPPERPKTPPYVPPRAPSPRPPSPRAPSPRAASPRASSPRVTSPKAASFRNSHHHKEVGYRPEPTLRHQNASATKIQAVYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTVNAMKHMQLLVRVQSQIQSRRIQMLENQARYQAEFKNDKDAASILGKLTSEAEEWDDSLLTKEEVEARLQRKVEAIIKRERSMAFAYSHQLWKATPKSTHTPVADTRSGGFPWWWNWLERQAPAPAAATPQERQVLKNFQLTPPRPYSEQKTSPRPGSSTQRQQQPHFAFDNMDTPTPKSTKSTIVTSSKPVRTPPYRTPQANSSGSGSKFLRPRGVGANSPFDVPLKDDESLTSCPPFSVPNYMAPTLSAKAKVRASSNPRERLGGTPTSTDSKRRLSFPLSQGIGSFKWSKGFSSKDQRVQDKFQPLDSIGNVSVDSTVSLPARVGRKPFTRFV 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02162 524 SMART iq_5 145 167 IPR000048 GO:0005515
Vian1g02162 524 Gene3D - 144 198 - -
Vian1g02162 524 MobiDBLite consensus disorder prediction 1 148 - -
Vian1g02162 524 MobiDBLite consensus disorder prediction 327 412 - -
Vian1g02162 524 MobiDBLite consensus disorder prediction 443 466 - -
Vian1g02162 524 MobiDBLite consensus disorder prediction 79 106 - -
Vian1g02162 524 PANTHER IQ-DOMAIN 5-RELATED 1 471 - -
Vian1g02162 524 ProSiteProfiles IQ motif profile. 146 174 IPR000048 GO:0005515
Vian1g02162 524 MobiDBLite consensus disorder prediction 451 466 - -
Vian1g02162 524 Pfam Protein of unknown function (DUF4005) 402 482 IPR025064 -
Vian1g02162 524 Pfam IQ calmodulin-binding motif 148 167 IPR000048 GO:0005515
Vian1g02162 524 MobiDBLite consensus disorder prediction 17 41 - -
Vian1g02162 524 MobiDBLite consensus disorder prediction 327 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02162 Vian-Chr1 26568924 26572630 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02162 1 523 IQD Protein Family AT3G59690 50.712 7.20e-165 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02162 - - gmx:100814804 825.854