Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02156 ATGATAGCCAGCTCTTTCTGCAATGCTGATTCTATGTTTTCAAGAGAAGAGGGGATAGATGTTAGAAAGATGATGGAGCATAAAAGGAGTCCCTGCTCTGTTGACCAAAGCAGTTATACTTCTATTGCATCTAAAAGGCAAAAGGCTGATTTATCTATCAGCACTAAGGAGAGGAAGGAGAAGATTGGGGAACGAATTGTTGCTCTTCAGCAGCTTGTTTCACCATATGGAAAGACAGATACATCTTCTGTTCTAAAGGAGGCAATGGAATACATAGGATTCCTTCATAAACAAGTTAAGCTGCTCAGTGCTCCATATCTTGAAACTTCAGCAGCAGCCAAGATGCAGGGTATGGAAGCATGCAGCCTGAGGAGTAGAGGGTTATGCCTTGTTCCTGTGTCATTTACAATTGGAGTTGCTGAGAGCAATGGTGCAGATATCTGGGCTCCCATTAAAACTACAACTTCACCTAAATTGGAGAATGATGTGTCTCAATTTCATTGA 504 0.4167 MIASSFCNADSMFSREEGIDVRKMMEHKRSPCSVDQSSYTSIASKRQKADLSISTKERKEKIGERIVALQQLVSPYGKTDTSSVLKEAMEYIGFLHKQVKLLSAPYLETSAAAKMQGMEACSLRSRGLCLVPVSFTIGVAESNGADIWAPIKTTTSPKLENDVSQFH 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02156 167 Gene3D - 43 117 IPR036638 GO:0046983
Vian1g02156 167 SMART finulus 52 101 IPR011598 GO:0046983
Vian1g02156 167 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
Vian1g02156 167 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 36 136 - -
Vian1g02156 167 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 110 IPR036638 GO:0046983
Vian1g02156 167 FunFam Transcription factor bHLH113 family 45 121 - -
Vian1g02156 167 CDD bHLH_AtbHLH_like 52 103 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02156 Vian-Chr1 26475423 26479160 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02156 24 157 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05710 55.769 6.47e-54 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02156 - - vun:114178105 317.775