Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02143 ATGGCTGTTGGGCCAGGAATGGATATGCCGATCATGCATGACAGTGATCGCTACGAACTCCTGCGTGACATTGGTTCTGGCAACTTCGGTGTAGCAAGGCTCATGAGGGACAAGCTCACCGAGGAACTTGTTGCTGTTAAGTATATTGAGAGAGGTGAAAAGATAGATGAAAATGTACAGAGAGAAATTATAAATCACAGATCTCTGAGGCATCCTAATATTGTGAGGTTCAAGGAGGTTATATTGACACCAACACATTTGGCAATTGTAATGGAATATGCTTCTGGAGGAGAGCTATTTGAGCGAATATGCAATGCAGGGCGATTCAGTGAGGATGAGGCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTATTGTCATGCAATGCAAGTATGCCATCGAGACTTGAAGTTGGAAAACACATTGTTGGATGGTAGTCCAGCTCCTCGTTTGAAGATTTGTGATTTTGGCTATTCAAAGTCCTCAGTGCTACATTCTCAACCAAAATCTACAGTGGGAACCCCTGCATATATCGCTCCAGAAGTTTTGCTTAAGAAGGAATATGATGGCAAGATTGCAGATGTGTGGTCTTGTGGGGTGACATTATATGTCATGTTGGTGGGAGCATATCCATTTGAGGATCCCGAGGAACCTAAAAATTTCCGCAAGACAATACATAGGATTTTGAATGTTCAGTACTCAATTCCAGACTATGTTCATATATCTCCCGAGTGCCGTCATCTGATATCAAGGATTTTTGTTGCTGATCCTGCAAAAAGAATAAGTATTCCTGAAATTAGAAACCACGAGTGGTTTTTGAAGAACCTTCCAAGTGATCTGATGGATGGGAATAGCAACAACCAGTTTGAGGAGCCTGATCAACCAATGCAAAGCATTGAAGAAATCATGCAGATAATCAGAGAGGCTACAATTCCTGCAGCTGGATCTCAGTCTCCCAACCATGATCTTACTGGTAGCTTGGATATTGATGAGGACATGGATACAGATCCTGATCTTGACTTAGATAGCAGTGGAGAAATAGTGTATGCCATGTAA 1062 0.4218 MAVGPGMDMPIMHDSDRYELLRDIGSGNFGVARLMRDKLTEELVAVKYIERGEKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQYSIPDYVHISPECRHLISRIFVADPAKRISIPEIRNHEWFLKNLPSDLMDGNSNNQFEEPDQPMQSIEEIMQIIREATIPAAGSQSPNHDLTGSLDIDEDMDTDPDLDLDSSGEIVYAM 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02143 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Vian1g02143 353 ProSiteProfiles Protein kinase domain profile. 18 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02143 353 Gene3D Phosphorylase Kinase; domain 1 1 93 - -
Vian1g02143 353 MobiDBLite consensus disorder prediction 313 346 - -
Vian1g02143 353 PANTHER SERINE/THREONINE KINASE 17 299 - -
Vian1g02143 353 Gene3D Transferase(Phosphotransferase) domain 1 94 282 - -
Vian1g02143 353 SUPERFAMILY Protein kinase-like (PK-like) 11 300 IPR011009 -
Vian1g02143 353 FunFam Serine/threonine-protein kinase SRK2E 9 93 - -
Vian1g02143 353 FunFam Serine/threonine-protein kinase SRK2E 94 282 - -
Vian1g02143 353 SMART serkin_6 18 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02143 353 CDD STKc_SnRK2-3 17 273 - -
Vian1g02143 353 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Vian1g02143 353 Pfam Protein kinase domain 18 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02143 Vian-Chr1 26227676 26230309 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02143 17 303 CBL-interacting serine-threonine protein kinases AT5G25110 43.289 3.91e-70 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vian1g02143 Pkinase 9.2e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02143 K14498 - gmx:100796253 677.552