Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02126 ATGGCCGGTGCCACAAATTGGCTTACGTTTTCGTTGACTCCCGTGGAAATGCTCAGATCCCCGGACTCTTCCTCTCACTGCATGCTCGATAACTTTTATGCCACCAATGGGTGGACAAATTCCAAGGAATTAATGGATTCTGAGAGTGAAAACCAGCCACTGCTGGTGCCGAAAGCGGAAGATTTTTTTGAGAACCAAACTGAGACGCAGCAAGACGATTCTTCGCTGACCCAAATTTATGACCATGGCTCTGCCTCTGTTTACTTCGGCGACCAGCAAGATCTGAACGCGATTCCAGGGTTTCAAGCATTCTCGGGTACCAACTCGAGCTCTGAGTTGGATGACTCGGCCTCAGACAAGACCACTCTGGTTGCACCAGCTGAGTTAGGTGCCCACTCAGGAGAGTCTAGCAAAGGAGCTTTGTCTTTATGTGATGGTGTTGCACATGACAAAGCCATCACTGCGGTGGAGCTTGCTACACCTAAGAAGGTTTCTCATACTATTGGCCAGAGAACTTCCATATACAGAGGGGTCACAAGACACCGATGGACGGGTAGATATGAAGCGCATCTATGGGATAACAGCTGTAGACGAGAGGGTCAGGCCAGGAAGGGGCGTCAAGGAAAGCTGGGTTTGACCACAACATCATTTCTTGCTCACTGTATTGAAATTTGCACTTACATGAATGTGGAGGGAGTCCCATGTTTGGCTGAAAGTGTCTGTCTGCTATTAGAAAAGACGGGCATCGCAGATGGATGGCATATCGTGTATTATCTTTTGGCTAGAATGGGAACCAAAGAAAAGTTAAATTTGATTTTTCATGGCTTTTTCATTGCTGTTTCTTTGCATGGAATGTGGCATTGCGCACTTCATCACTGTGTCGCACGTCCTTTGACTGTTTCTACAGTGTACTTGGGTGGATATGACAAGGAGGAAAAGGCTGCTAGAGCGTATGATTTAGCAGCTATCAAGTACTGGGGACCAACAGCAACCACCAACTTTCCTATTTCCAATTATACAAAGGAATTGGAGGAGATGAAACATTCAGGAAAGCAAGAATTCATTGCATCACTGCGAAGGAAAAGTAGTGGGTTTTCAAGGGGAGCTTCCGCATACAGGGGGGTTACGAGGCATCATCAACAGGGTAGATGGCAAGCAAGAATCGGCCGAGTTGCGGGAAACAAGGATCTATATCTGGGAACATTTGGCAAGGTGTCTGCGACTGAAGAGGAAGCAGCAGAGGCATATGATATTGCAGCCATAAAGTTCAGAGGTGCAAGCGCTGTAACAAATTTTGAGATGAGCAGATATGATGTGGAGAATATATTGAATAGCTCTCTTCCAGTAGGTGGGGTAGCAAAACGATTGAAGCTTTCGTCCTCCCCAGAATCGGAGAAGAAAGCTATTGTTACTGATGAACAACCTGAGGGCACAAACGAGAGTAGCACCATCAATTTCTCTGCCATTCAGCCAGTTGCATCTATACCTTATGATTCTGCGAACGCGTACCCACAAAACCTTTTCCACCAGTTTCATCATTCCAACAGTGGAAGTAGTAGCTCAGTACAAGAGTCTGATGCAATTGTGACCAATGCAACTGCACTGACCATCCTTCCACCACCACCTGCTGTTCCTGGGTTCTTTTTATGGCCTCCTCAGTCCTTTTGA 1668 0.4652 MAGATNWLTFSLTPVEMLRSPDSSSHCMLDNFYATNGWTNSKELMDSESENQPLLVPKAEDFFENQTETQQDDSSLTQIYDHGSASVYFGDQQDLNAIPGFQAFSGTNSSSELDDSASDKTTLVAPAELGAHSGESSKGALSLCDGVAHDKAITAVELATPKKVSHTIGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGKLGLTTTSFLAHCIEICTYMNVEGVPCLAESVCLLLEKTGIADGWHIVYYLLARMGTKEKLNLIFHGFFIAVSLHGMWHCALHHCVARPLTVSTVYLGGYDKEEKAARAYDLAAIKYWGPTATTNFPISNYTKELEEMKHSGKQEFIASLRRKSSGFSRGASAYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFGKVSATEEEAAEAYDIAAIKFRGASAVTNFEMSRYDVENILNSSLPVGGVAKRLKLSSSPESEKKAIVTDEQPEGTNESSTINFSAIQPVASIPYDSANAYPQNLFHQFHHSNSGSSSSVQESDAIVTNATALTILPPPPAVPGFFLWPPQSF 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02126 555 SMART rav1_2 371 439 IPR001471 GO:0003700|GO:0006355
Vian1g02126 555 SMART rav1_2 174 341 IPR001471 GO:0003700|GO:0006355
Vian1g02126 555 Pfam AP2 domain 371 425 IPR001471 GO:0003700|GO:0006355
Vian1g02126 555 SUPERFAMILY DNA-binding domain 370 435 IPR016177 GO:0003677
Vian1g02126 555 ProSiteProfiles AP2/ERF domain profile. 174 335 IPR001471 GO:0003700|GO:0006355
Vian1g02126 555 ProSiteProfiles AP2/ERF domain profile. 371 433 IPR001471 GO:0003700|GO:0006355
Vian1g02126 555 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 53 505 - -
Vian1g02126 555 Gene3D AP2/ERF domain 371 435 IPR036955 GO:0003700|GO:0006355
Vian1g02126 555 Gene3D AP2/ERF domain 278 337 IPR036955 GO:0003700|GO:0006355
Vian1g02126 555 Gene3D AP2/ERF domain 174 221 IPR036955 GO:0003700|GO:0006355
Vian1g02126 555 CDD AP2 303 337 IPR001471 GO:0003700|GO:0006355
Vian1g02126 555 SUPERFAMILY DNA-binding domain 284 337 IPR016177 GO:0003677
Vian1g02126 555 PRINTS Ethylene responsive element binding protein signature 175 186 IPR001471 GO:0003700|GO:0006355
Vian1g02126 555 PRINTS Ethylene responsive element binding protein signature 317 337 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02126 Vian-Chr1 25932160 25936583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02126 303 487 AP2-EREBP Transcription Factor Family AT5G57390 68.649 9.49e-82 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian1g02126 AP2 3.6e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02126 K09285 - gmx:100814405 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01252 10 20911409 20915453 Vian1g02126 1 25932160 25936583 PCT