Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02114 ATGGTACCACCAGAAGGCATGCCACCAACACCGAAAGACCATGAGCTCACTGAGGGCCGCAAAACGACGAGGCCGCCACCGGAACAAGGTGTGAAGTGCCCGAGATGTGACTCACCAAACACCAAGTTCTGCTACTACAACAACTACAGCCTCACACAGCCCAGGCACTTCTGCAAGACCTGCAGGAGGTACTGGACCAACGGGGGTGCCTTGCGCAACGTCCCGATAGGAGGGGGTTGCAGGAAGAACAAAAAGGTGAAACCTTCTTCCTCCGCTTCCTCTTCCTCCTCCTCCAGACTCTCCTGTGACCCTAAAGACTTCAATTTTCATGGTCTCTCAGTTCCTCCTTCCGTTGACTTCAACCTCGGAGGGATACCCTTTCCCTCCAGGCTCACTACTTTCAACACTCAACACCACCTCCCAACACCCCCAACTGGGGTGTTCAACCAGTTCTCTTCTTTTGGGGACGTTCCATCATCTTCCACCAGTTCTCTTTCTGCTTTGTCTGCCTTCCAGCTTGACCCCCCTGCTGCTGTTTCAAACCCTCTCTTGGGTCTCGTTCCGCCCAACCCTGACCTCTGGGCTCTACGTAGGTCAGAAAGGGCCTCACTCTCTGATCCATTGAACAGTGCAATGCAAACCCTTCAGACCATGGAAGCCATGAACGTTCACAGCAACCTTGCTTCTTCAATTGAGTCGCTGAGCAACATCAACCAGGACTTGCACCTGAAGCTGCAGCAGCAGCGCATGGCGACAATGATGTTCGGTGGGGACAGCCAGAAAGGTGAGAGCAGCGCTGCCCTGAATGGGTTTGGGAATCAGAAGCTGCTACAACCGGTTTCGTTTCAGAACCTTGCGATTTCGAAGCCAGAGAACTTGCCAGCTGGCAGTTCCATAAATGGTGGTCCAAGTGGGGAGACAGTTACTGCAGCATCCACTGAATGGTTCTTTGGGAATTCCTTTCCCTCAGTGTCTCCTTCAACAAGCAATGGTGGTGCCAATGTTAACCACATTAGCAACGATGCAAACAACAACAACAGCTGGACTGGTTCCCTTGCCTGGGGAGATTTGCAGCAGCAACCATACACCGCTTTGCCCTAG 1101 0.5286 MVPPEGMPPTPKDHELTEGRKTTRPPPEQGVKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTNGGALRNVPIGGGCRKNKKVKPSSSASSSSSSRLSCDPKDFNFHGLSVPPSVDFNLGGIPFPSRLTTFNTQHHLPTPPTGVFNQFSSFGDVPSSSTSSLSALSAFQLDPPAAVSNPLLGLVPPNPDLWALRRSERASLSDPLNSAMQTLQTMEAMNVHSNLASSIESLSNINQDLHLKLQQQRMATMMFGGDSQKGESSAALNGFGNQKLLQPVSFQNLAISKPENLPAGSSINGGPSGETVTAASTEWFFGNSFPSVSPSTSNGGANVNHISNDANNNNSWTGSLAWGDLQQQPYTALP 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02114 366 ProSiteProfiles Zinc finger Dof-type profile. 31 85 IPR003851 GO:0003677|GO:0006355
Vian1g02114 366 MobiDBLite consensus disorder prediction 1 32 - -
Vian1g02114 366 ProSitePatterns Zinc finger Dof-type signature. 33 69 IPR003851 GO:0003677|GO:0006355
Vian1g02114 366 MobiDBLite consensus disorder prediction 86 101 - -
Vian1g02114 366 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 20 249 IPR045174 GO:0003700|GO:0006355
Vian1g02114 366 MobiDBLite consensus disorder prediction 76 101 - -
Vian1g02114 366 Pfam Dof domain, zinc finger 30 85 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02114 Vian-Chr1 25713998 25715098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02114 9 366 C2C2-Dof Transcription Factor Family AT5G65590 35.263 8.42e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vian1g02114 zf-Dof 3.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02114 - - ccaj:109819084 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01262 10 21106728 21107753 Vian1g02114 1 25713998 25715098 PCT