Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02108 ATGCTTCATGGCACCGTTGCCAATGGTAGGCGAAGGCCACTCTCACGATGGTTCGATGCAAAGCAGGTTGTTGCCCCCAAGTCCAAGGCGAGTTTAAGTGAGTTCAAAGGTTCTGACGTAGCATTTAATAATCCTGAAGTCAAATTGCATATAGAAAACAAGCAGATCACAGTGCAAAATGGCATCATTCGTGTAACTTTCTCAAATCCGGAGGGCACTATCCTTGGAATATCGTATAATGGAATAAAAAATGTGCTTGAAGGTCGCAATAACTTCAACAACAGAGGAATTGAAGGGAGTAGATTTTCAGTTATAGAGACCAACAAGAATGAAGTAGAACTTTCGTTTTCCAGAACGTGGAACAAGGACAACTCAAGTCCTCCCTTAAACATAGACAAAAGATATATTTTACGAAGAGGTAGTTCAGGATTATACATATATGGTATATTTGAGCATCCTGAAGATTTTCCTGCAACGGAGATTGATCACATTAGGATTGTTTTCAAGCTGCAGAAGGAGAGGTTCCACTACATGGCTATAGCAGATGATAGGCAGCGAGTCATGCCAACAGCAGAAGATAGATCTACAGGGCAACGCCTTGATTATGATGAAGCTGCTCTAATCACCAATCCTAGTAACCCTCAGCTTCAAGGAGAGGTTGATGACAAATATCAATACTCTTGTGAGAACAAAGACAACAAAGTTCATGGGTGGATTAACTTGGACTTGAAGAACAATAAGTCAGTGGGCTTTTGGATGATCACACCAAGTAATGAGTTTCGTAGTGGTGGCCCAATTAGGCAAGGCCTTACTTCTCATGTTGGCCCTGTCACTCTTAATATACTCCATACCACTCACTACTCTGGGAAGGAAGTAACCATGACATTACACGAAGGAGAACCCTTCAAGAAAGTATATGGTCCCGTTTTTGCTTATCTTAACTCAGTTTCAAGGGTTCATCATTCAGAACAAGTCCTCTGGAGTGATGCTGTACAACAGCTATCAAAGGAAATCAATAGATGGCCTTATGATTTCCCTAAATCAGAGGATTTTGTCCCTACAAATAAAAGGGGAAGAGTGGAAGGACAATTACTCGTCCAAGACAGACACATTAAAGGAGGCACATTTTTATATGGCGAAAATGCCCACATTGGTTTGGCACTTCCTGGAGACGTGGGATCATGGCAGAGACAAAGCAAGGGTTACCAATTCTGGACTCAAGCTGCTAAACTTGGCCACTTCGCTATAGCAAATATTGTACCAGGAGACTACAATTTATATGCATGGATTCCTGGAGTTTTTGGAGACTATAAATATAACACTACCATAACCATAACACCAGGATGTATCATCCAATTGGGTTCACTCATATACAATCCTCCAAGAAATGGACCAACCTTATGGGAAATTGGCATCCCAGATCGCTCTGCTGCAGAGTTCCACGTTCCAAATCCTTATCCTAACCTCATAAACCGATTATACATAGCAAAACCATTGCACAAGTTTAGACAATATGGATTATGGAAGCGTTACAACGAGTTATATCCAAATGAGGACCTCACTTACACTGTTGGCGTGAGTGATTACAGTAAAGATTGGTTTTATGCTCATGTTCCCAGGAACATTGGAAACAACTCATATCATCCAACAGTATGGGAGATTAAATTTCATCTCCCATTTGTTATGAGAGGCATCTACACACTGCGACTTGCCTTGGCCTCAGCTACACGTTCTAACTTGATGGTTAGGTTCAACAACCCTGTGGCTCGTCCTCCACATTTTTCTACGGGATTAATAGGTCAAGATAATGCAATAGCAAGACATGGCATCCATGGATTGTATTGGCCTTATAGTATTGAAGTAGGAAGCAATGTATTGGTGGAAGGAAGCAACACCATCTATCTTAGACAAACAAAAGACTGGTGCCACGATTATGATTGCGGCGGCTTCTGCGAAGATGCAAAGACGACAATGGTGGCCAGTGAGGCTCGAGTTGGCGGCGCTGATACGGCGGTGGTTGACGGCACGGTGGTTGAAGGGAATTATTGA 2049 0.4226 MLHGTVANGRRRPLSRWFDAKQVVAPKSKASLSEFKGSDVAFNNPEVKLHIENKQITVQNGIIRVTFSNPEGTILGISYNGIKNVLEGRNNFNNRGIEGSRFSVIETNKNEVELSFSRTWNKDNSSPPLNIDKRYILRRGSSGLYIYGIFEHPEDFPATEIDHIRIVFKLQKERFHYMAIADDRQRVMPTAEDRSTGQRLDYDEAALITNPSNPQLQGEVDDKYQYSCENKDNKVHGWINLDLKNNKSVGFWMITPSNEFRSGGPIRQGLTSHVGPVTLNILHTTHYSGKEVTMTLHEGEPFKKVYGPVFAYLNSVSRVHHSEQVLWSDAVQQLSKEINRWPYDFPKSEDFVPTNKRGRVEGQLLVQDRHIKGGTFLYGENAHIGLALPGDVGSWQRQSKGYQFWTQAAKLGHFAIANIVPGDYNLYAWIPGVFGDYKYNTTITITPGCIIQLGSLIYNPPRNGPTLWEIGIPDRSAAEFHVPNPYPNLINRLYIAKPLHKFRQYGLWKRYNELYPNEDLTYTVGVSDYSKDWFYAHVPRNIGNNSYHPTVWEIKFHLPFVMRGIYTLRLALASATRSNLMVRFNNPVARPPHFSTGLIGQDNAIARHGIHGLYWPYSIEVGSNVLVEGSNTIYLRQTKDWCHDYDCGGFCEDAKTTMVASEARVGGADTAVVDGTVVEGNY 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02108 682 Pfam Polysaccharide lyase family 4, domain II 381 452 IPR029413 -
Vian1g02108 682 SUPERFAMILY Galactose-binding domain-like 463 641 IPR008979 -
Vian1g02108 682 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 52 639 - -
Vian1g02108 682 Gene3D - 352 452 - -
Vian1g02108 682 Pfam Rhamnogalacturonate lyase family 44 96 IPR010325 -
Vian1g02108 682 Pfam Rhamnogalacturonate lyase family 97 220 IPR010325 -
Vian1g02108 682 Pfam Polysaccharide lyase family 4, domain III 466 641 IPR029411 -
Vian1g02108 682 FunFam Rhamnogalacturonate lyase B 353 453 - -
Vian1g02108 682 CDD RGL4_N 47 317 - -
Vian1g02108 682 CDD RGL4_M 356 456 IPR029413 -
Vian1g02108 682 SUPERFAMILY Starch-binding domain-like 353 453 IPR013784 GO:0030246
Vian1g02108 682 SUPERFAMILY Galactose mutarotase-like 54 330 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vian1g02108 682 CDD RGL4_C 468 639 - -
Vian1g02108 682 Gene3D - 464 645 - -
Vian1g02108 682 Gene3D - 48 312 IPR014718 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02108 Vian-Chr1 25642130 25653250 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02108 47 639 Polysaccharide Lyase AT1G09910 52.358 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02108 K18195 - gmx:100792575 1014.6