Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02107 ATGAAGAAAAAGGCATCACGGGATGAACTTTTGTTGGTAAACCGTGCCCAACAGGGAATAGTGGGTGCCATTCACACATGTAAAAGGGCACCATCACTTCAAGGTTCGTGCTCCCATTTCTTTCAAAATTCTCTTGTGGCTGAAAATTCCTTTCATTCACATGCATGGAATGATGAGACCATAGTTTTCTGCAATTTTAACAGAGCAATGTTCACCTTATTGAGAGATGAAGGGGAAGAGCCAAAAGGTTTTCTTGCTTTTCTGGTTTGGAATGACCCTACGCTTGTTTTTCTTACTCGGTGCCTGTTGCGAGAAGACAACAAGTTAGCCACTACTGTGGTGGTAATGAAAGGAATTGATTCTTGCACCCACGTCATCATCCCTGAACCAAAAACTATGAGGCAAAGCCCCCCCACTCAACAGACAACTTCTAAGTCTGGGGTCATTCTGAATACAAAGAACAGTCAACAGGTGGTGGTTGACAATGGCATTGTTTCCATCAATTTTTCAAGACCTAAGGGTTACACCCTTGGAATGTCATACAAAGGAATTGACAATATACTCGAAGACGATAACGAAGAACAAGATAGAGGGTACCTTGATGTCGTTTGGAATATGCCACCATCAAAGAATAGTACTTTTGAGAGAATCTTCGGGACAAATTTTACGGTTATAGCAAATGACGACAATATCGTTGAGCTCTCATTTTTAAGAACATGGAATTCGTCCATGAAAGGCTCGAGTGTCCCTATGAACATTGACATAAGATACATTTTGCGAAGTGGTGATTCCGGATTTTATGCATATGCAATATTTGATCGTCCTGAAGGATGGCCTGCGGTGGAGATTGACCAAATTAGGATCGTTTTCAAACTCCAATCCAAATTCAACTATATGGCAATATCGGATGAAAGGCAAAGAAACATGCCAACGAAGAAAGATAGAGAAACTGGTCAAGAATTGGCATACCCCGAAGCAGTTCTGTTAACGAAACCAGCCAATCCAGAATTTAGAGGAGAGGTGGATGACAAATACCAGTACTCAAGTGAAAACAAGGATAGCACTGTTCATGGATGGGTGAGTGTTGATGCCGATGCACCCGTGGGTTTCTGGATGATAACCCCAAGCAACGAGTTCCGCAATGCTGGCCCCATCAAGCAAGACCTTACTTCACATGTTGGCCCCATTACCCTCTCGATGTTTGTGAGCACTCACTATGCTGGCAAGGAGTCAACCATGTCCTTTAAAGAAGGGGAGACTTACAAAAAAGTTTTCGGCCCTGCGTTCGTCTACGTTAACTCTGCTTCAGGCGAGGATGGTACACTATCCCTCTGGTCAGACGCTGTGCAGCAGCAAGCCAAAGAAGTCAGAAGTTGGCCGTACGAATTTCCTAAATCTGTGGATTTCGTTCCACCCAGTCAAAGGGGAATAGTTTTGGGAAGATTACTAGTGAAAGATAGTTACTACAGAGGAGGTAAAGTTGTGTATGCTGACAATGCTTACGTTGGCCTAGCTTTACCTGGAGAAACAGGGTCATGGCAAAAAGAAAGCAAGGGCTATCAGTTCTGGACTCAAGCTGATACAAAGGGTTTTTTCCTGATAAATAATATTGTGCCCGGTGACTATAATTTGTATGCATGGGTTCCTGGCTTCATTGGTGATTACAGATATAATGTTACAATCACCATCAAAAAGGGAGGAGTCATCACATTGGATTCACTTGTGTTTGTTCCACCAAGAAGTGGACCAACCTTGTGGGAAATTGGGTTCCCAGATCGCACGGCTGCAGAATTCTATATACCAGACCCTTACCCTACGCTCATGAATAAATTATACAACAAAAAGCCCAATGACAAGTTTAGGCAATATGGGTTGTGGGATCGTTACACTGATTTATATCCAAATGATGATCTTGTTTTCACTGTTGGTAAAAGCAAGTATGACAAGGATTGGTTTTTCGCTCACGTTTCAAGAAACGCAGGAAACAAGACATTCCAGCCAACGACATGGCAGATTGTATTTGATCATCCAAATGAAGTAGAAAAAGGAAACTACACATTGCAACTGGCATTGGCATGTACCAGTGATGCTAACCTGCAGATTCGTTTCAATGACGCTGGAGCAAAAAACCCAGACTTTGGAACTGGGAAAATCGGAGCAGATAGTGCGATAGCAAGGCATGGTGTGCATGGTTTGCATAGGCTATTCAGCATCGGTGTAAAAAGTAGTCGAATTGTAAAAGGAAAGAACACGATCTATTTGAAGCAGGCAAGAGCCAAGAATGCTTATCAAGGAGTAATGTATGATTATATCCGTTTAGAAGGACCTCCATCGACAGGGAAATGA 2346 0.4263 MKKKASRDELLLVNRAQQGIVGAIHTCKRAPSLQGSCSHFFQNSLVAENSFHSHAWNDETIVFCNFNRAMFTLLRDEGEEPKGFLAFLVWNDPTLVFLTRCLLREDNKLATTVVVMKGIDSCTHVIIPEPKTMRQSPPTQQTTSKSGVILNTKNSQQVVVDNGIVSINFSRPKGYTLGMSYKGIDNILEDDNEEQDRGYLDVVWNMPPSKNSTFERIFGTNFTVIANDDNIVELSFLRTWNSSMKGSSVPMNIDIRYILRSGDSGFYAYAIFDRPEGWPAVEIDQIRIVFKLQSKFNYMAISDERQRNMPTKKDRETGQELAYPEAVLLTKPANPEFRGEVDDKYQYSSENKDSTVHGWVSVDADAPVGFWMITPSNEFRNAGPIKQDLTSHVGPITLSMFVSTHYAGKESTMSFKEGETYKKVFGPAFVYVNSASGEDGTLSLWSDAVQQQAKEVRSWPYEFPKSVDFVPPSQRGIVLGRLLVKDSYYRGGKVVYADNAYVGLALPGETGSWQKESKGYQFWTQADTKGFFLINNIVPGDYNLYAWVPGFIGDYRYNVTITIKKGGVITLDSLVFVPPRSGPTLWEIGFPDRTAAEFYIPDPYPTLMNKLYNKKPNDKFRQYGLWDRYTDLYPNDDLVFTVGKSKYDKDWFFAHVSRNAGNKTFQPTTWQIVFDHPNEVEKGNYTLQLALACTSDANLQIRFNDAGAKNPDFGTGKIGADSAIARHGVHGLHRLFSIGVKSSRIVKGKNTIYLKQARAKNAYQGVMYDYIRLEGPPSTGK 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02107 781 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 151 777 - -
Vian1g02107 781 SUPERFAMILY Galactose-binding domain-like 581 774 IPR008979 -
Vian1g02107 781 Gene3D - 470 573 - -
Vian1g02107 781 SUPERFAMILY Galactose mutarotase-like 151 436 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vian1g02107 781 Pfam Rhamnogalacturonate lyase family 139 341 IPR010325 -
Vian1g02107 781 CDD RGL4_N 151 439 - -
Vian1g02107 781 CDD RGL4_M 474 574 IPR029413 -
Vian1g02107 781 CDD RGL4_C 586 774 - -
Vian1g02107 781 SUPERFAMILY Starch-binding domain-like 470 574 IPR013784 GO:0030246
Vian1g02107 781 Pfam Polysaccharide lyase family 4, domain II 498 570 IPR029413 -
Vian1g02107 781 Pfam Polysaccharide lyase family 4, domain III 584 773 IPR029411 -
Vian1g02107 781 Gene3D - 581 774 - -
Vian1g02107 781 FunFam Rhamnogalacturonate lyase B 471 571 - -
Vian1g02107 781 Gene3D - 149 447 IPR014718 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02107 Vian-Chr1 25626165 25632346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02107 144 778 Polysaccharide Lyase AT1G09910 52.978 0.0 690
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02107 K18195 - gmx:100776664 1078.93