Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02106 ATGGCTTTCTTCTCCTCTTCTTCATGCTCTAATCAAACCCAGAAACAAACATCTTTCTTCATATGTATCATCTTCTTCTTCACTTTGTTCCATAACACTGTAGAGTCAGTTTCCTTCAACTTTTCCAGCTTCCAGCAGTCAAACTTGAACAACCAAATAAATTTCACGGGTGATGCTTTTCCCTCAAACGGTGTTCTTCAGCTCACGAAGAACCAACTCGATGGCCCCATCACAAGTAGCGTTGGTCGAGCCTCGTATGAACAACCAGTGAGGATATGGGATAAAAAAACAAACAATCTCACCGATTTCAAAACCCATTTCTCTTTTATCATGAAAGCTGTGAACGAGTCATTTATTGGTGATGGCTTAGCCTTCTTCCTTGCACCCTTTGATTCTTCCATTCCCAACAATTCTGCTGGTGGGTTCCTTGGCCTGTTCAGCCCGGATTCCGCATTCGACACGAAGAAAAATCAGATGGTGGCAGTTGAGTTCGACAGTTTCAAGAATGAATGGGATCCGAGCTCAGACCACGTAGGGATCAATGTTAATTCCATTCAATCAGTTGCAAACGTCACTTGGAAGAGCAACATTAAGAACGGGTCTGTTGCTAATGCTTGGGTATGGTACAACTCCACATCCAAAACTCTATCTGTCTTCCTTACCTATGCTAAAAATCCAACCTTCAATGGCAGTTCCAGTCTTTCTTACGTTATTGATTTGAGGGACGTGTTGCCAGAGTTTGTTAGAATAGGCTTTTCTGCAGCAACGGGAATATCGGTTGAGATACACAACATTTTGCTTTGGTCATTCAGTTCAACCTTGGATGAGGTTGGTGGGAAAAAGGTAAAGGTTGGCTTAGTGGTTGGTGTAAGTGTTGGTTTGGGTTGTTTAGCTTGTGCTGCAGGTATAATATGGTTTACCTTTTGGAGAAGGAGAAATAGACTAAGGGGTGGAAACGAGGAGGAAATTGGTGTTGATGCCATAGATGATGAGTTTGAGAGAGGAACTGGTCCAAAGAGGTTCACCTACCGGGAACTAAGCAACGCAACGAACAACTTCGCTGAAGAAGGGAAGCTAGGACAAGGAGGGTTTGGAGGAGTTTACAAAGGTTTGGCATCTGCACTTCTTTATCTTCATGAAGAGTGGGAACAGTGTGTGGTCCATAGAGATATCAAGTCAAGCAACGTAATGTTGGATGGTAATTTCAATGCAAAGCTTGGTGACTTTGGTCTTGCAAGGCTGGTAGACCACGAACTGGCCCCTTTGCCAAGTCTTCCATCCAAGTTGCCAGTGCCAATGTACTTTGCACCTCCCATGGAGATTACTCAATTCTCCTACTCTTCATCTGCCGTCACAACCACAACCAAAGATTCCTCCCCGTACTCCTCAATTTCTACTGCCTCCCGAAACTCTCCCTTGTAG 1422 0.4402 MAFFSSSSCSNQTQKQTSFFICIIFFFTLFHNTVESVSFNFSSFQQSNLNNQINFTGDAFPSNGVLQLTKNQLDGPITSSVGRASYEQPVRIWDKKTNNLTDFKTHFSFIMKAVNESFIGDGLAFFLAPFDSSIPNNSAGGFLGLFSPDSAFDTKKNQMVAVEFDSFKNEWDPSSDHVGINVNSIQSVANVTWKSNIKNGSVANAWVWYNSTSKTLSVFLTYAKNPTFNGSSSLSYVIDLRDVLPEFVRIGFSAATGISVEIHNILLWSFSSTLDEVGGKKVKVGLVVGVSVGLGCLACAAGIIWFTFWRRRNRLRGGNEEEIGVDAIDDEFERGTGPKRFTYRELSNATNNFAEEGKLGQGGFGGVYKGLASALLYLHEEWEQCVVHRDIKSSNVMLDGNFNAKLGDFGLARLVDHELAPLPSLPSKLPVPMYFAPPMEITQFSYSSSAVTTTTKDSSPYSSISTASRNSPL 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02106 473 SUPERFAMILY Concanavalin A-like lectins/glucanases 35 274 IPR013320 -
Vian1g02106 473 MobiDBLite consensus disorder prediction 452 473 - -
Vian1g02106 473 ProSitePatterns Legume lectins alpha-chain signature. 244 253 IPR000985 -
Vian1g02106 473 ProSitePatterns Legume lectins beta-chain signature. 160 166 IPR019825 -
Vian1g02106 473 ProSiteProfiles Protein kinase domain profile. 131 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02106 473 Pfam Legume lectin domain 37 275 IPR001220 GO:0030246
Vian1g02106 473 SUPERFAMILY Protein kinase-like (PK-like) 338 438 IPR011009 -
Vian1g02106 473 Pfam Protein kinase domain 371 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02106 473 Gene3D Transferase(Phosphotransferase) domain 1 364 463 - -
Vian1g02106 473 FunFam L-type lectin-domain containing receptor kinase IX.1 35 283 - -
Vian1g02106 473 Gene3D - 34 284 - -
Vian1g02106 473 CDD lectin_legume_LecRK_Arcelin_ConA 37 274 IPR001220 GO:0030246
Vian1g02106 473 PANTHER - 369 418 - -
Vian1g02106 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 386 398 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02106 Vian-Chr1 25615412 25617451 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02106 370 421 Receptor kinase-like Gene Family AT5G10530 92.308 1.25e-25 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vian1g02106 Lectin_legB 9.7e-71 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02106 - - pvu:PHAVU_003G287100g 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01268 10 21247348 21256473 Vian1g02106 1 25615412 25617451 PCT
Vian1g02106 1 25615412 25617451 Vian10g01267 10 21244419 21245463 PCT