Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02095 ATGGAGCTTTCTCAGCTTGGTTTCTTAGAAGAATTGGTAGCTCCAAGAAGAGAGACATGGAATGCTTTATCCAGTGGGTTCTTGGAGCTATTGTCTAATGGTTGGAGTTTTGACACTTTTCTTGATAACCCATCTTTCCCCTCCTCTAACACCCTCTTTGGTGCATTTTCAGCACCATTAGACCGCAGATTTGAATGCCCTTTCACCAATGAACTACCACCATACCCATTTCCCGATGCCTTCACAATGCCATTGCCAGACCTTCAACCTGGCAACGATCATCCCTCACCTCCACTTCCACCCACACTCGAGGATGCAGATATTGCCTTTTATCACAACAACGATAACAACTTTCAAGAAATCAAGACTGTCTGCAAAGTTGAAGAACACGGTGTTGAGAATCCACAACCCACAGAGATTCCACTCTTCAACACAGCCATGTCTGATGATGGAGAGAGAAAACACAAGTCCAAAAAGCTAGAGGGACAGCCCTCAAAGAATCTCATGGCAGAAAGGAGGAGAAGAAAACGTCTCAATGACCGTCTTTCCATGCTTAGGTCAATAGTCCCCAAGATCAGCAAGATGGACAGGACCTCTATTCTTGGGGATACTATAGACTACATGAAAGAGCTTTTGGAAAGGATTGGCAAGTTGCAAGAAGAAGAGGTGGAAGAGGGCTCAAGTCAGATTAATCTGTTGGGCATTTCAAGGGACCAACTCAAACCAAATGAAGCAATTGTAAGAAACTCCCCCAAGTTTGATGTTGAAAGGAGAGACCAGGACACTAGGATCAGCATTTGCTGTGCCACAAAGCCTGGATTGCTACTATCAACCGTCAATACATTAGAAGCATTGGGCCTTGAGATTCAGCAATGTGTTGTAAGCAGCTTCAATGACTTTTCAGTGGAAGCATCTTGTTCTGAGGTAGGTGAACAGAGAAATAGCATTAGCCCTGAGGAGATAAAACAATCACTATTCAGAAATGCTGGGTTTGGTGGGAAATGTCTCTAG 1011 0.4411 MELSQLGFLEELVAPRRETWNALSSGFLELLSNGWSFDTFLDNPSFPSSNTLFGAFSAPLDRRFECPFTNELPPYPFPDAFTMPLPDLQPGNDHPSPPLPPTLEDADIAFYHNNDNNFQEIKTVCKVEEHGVENPQPTEIPLFNTAMSDDGERKHKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEVEEGSSQINLLGISRDQLKPNEAIVRNSPKFDVERRDQDTRISICCATKPGLLLSTVNTLEALGLEIQQCVVSSFNDFSVEASCSEVGEQRNSISPEEIKQSLFRNAGFGGKCL 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02095 336 SMART finulus 168 217 IPR011598 GO:0046983
Vian1g02095 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983
Vian1g02095 336 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 96 331 - -
Vian1g02095 336 Pfam Helix-loop-helix DNA-binding domain 168 211 IPR011598 GO:0046983
Vian1g02095 336 Gene3D - 148 212 IPR036638 GO:0046983
Vian1g02095 336 MobiDBLite consensus disorder prediction 148 176 - -
Vian1g02095 336 MobiDBLite consensus disorder prediction 135 176 - -
Vian1g02095 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 223 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02095 Vian-Chr1 25508610 25509965 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02095 9 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 45.533 1.26e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian1g02095 HLH 7.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02095 - - gmx:100790319 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01290 10 21909698 21911113 Vian1g02095 1 25508610 25509965 PCT