Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02091 ATGTCTCCGCCTCTGTTGGTTACTGAAGATGAAGGGCAGAACAATGCCTCAATGGTAGCGTCTGCATCTTCACCATCCATGGAGTGTTTCACCCCACATGAGGCTAGATTGAAAGAACGCAATTACCTGGGATTGTCAGATTGCTCTTCGGTGGAAAGTTCTACTGTCCCGAACTTGTCTGGTGAGAAAAAGAACATGAATTTGAAGGCTACTGAGTTGAGGCTGGGCCTTCCTGGATCCCAGTCACCTGAAAGGGATCCAGATATTTTCCCATTGACCTCAGCAAAACTTGACGAGAAACCACTGTTCCCTTTGCTTCCTACAAAGGATGGAATCTTCACATTGTCCCAGAAAACTGTGGTCTCCGGCAACAAAAGAGGTTTTGCTGACACGATGGACACTGAGTTTCCTGGAAATGCAGGGATAAACATGATGCTATCACCTAAACCTTCTGGGATTCTGCCAACCATAGTGAAAGAAGTATCCAGCAAGGTTTTACAGGAACGTCCTGCTGCAGCAAATGGAACTGGTCTTAACCATACAGGAGCTTCTATCAGTGGCAGTGCACCTGCTTCCAAGGCACAAGTTGTTGGTTGGCCTCCTATAAGGTCATTTAGGAAGAACTCATTGGCCACCACTTCAAAGAACAATGATGAAATAGATGGAAAACCATGTCCAGCCGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTGAGGAAAGTAGATCTAAGAAATTATACAACATACCAGGAACTGTCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTCACTCTAGGTCAATGTGGTTCCCATGGAGTGCCAGGAAGAGAAATCTTGAGTGAGAGCAAGCTGAAGGACCTCCTGCATGGTTCGGAATATGTACTTACTTATGAAGATAAAGATGGTGACTGGATGCTTGTTGGAGATGTACCATGGGATATGTTCATTGACACATGCAAAAGGCTTAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGGTGTGTATTCTGGCTCCAAGGGCCATGGAAAAATCCAGGAGCAGGAGCTAGTCGTTATTGGAAATGTTGACTGCGTTTTGTCTACTTTACTGAAAGTTGCTAGATATGAGAAAGGTGTGGAAAGAAAACTATGGTATAAACGACCGAATGCCGGGTTTTGA 1170 0.4504 MSPPLLVTEDEGQNNASMVASASSPSMECFTPHEARLKERNYLGLSDCSSVESSTVPNLSGEKKNMNLKATELRLGLPGSQSPERDPDIFPLTSAKLDEKPLFPLLPTKDGIFTLSQKTVVSGNKRGFADTMDTEFPGNAGINMMLSPKPSGILPTIVKEVSSKVLQERPAAANGTGLNHTGASISGSAPASKAQVVGWPPIRSFRKNSLATTSKNNDEIDGKPCPAALFVKVSMDGAPYLRKVDLRNYTTYQELSSALEKMFSCFTLGQCGSHGVPGREILSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWDMFIDTCKRLKIMKGSDAIGLGVYSGSKGHGKIQEQELVVIGNVDCVLSTLLKVARYEKGVERKLWYKRPNAGF 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02091 389 SUPERFAMILY CAD & PB1 domains 225 329 - -
Vian1g02091 389 MobiDBLite consensus disorder prediction 1 26 - -
Vian1g02091 389 MobiDBLite consensus disorder prediction 7 26 - -
Vian1g02091 389 Pfam AUX/IAA family 71 337 IPR033389 -
Vian1g02091 389 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 335 IPR003311 GO:0005634|GO:0006355
Vian1g02091 389 MobiDBLite consensus disorder prediction 173 192 - -
Vian1g02091 389 FunFam Auxin-responsive protein 224 340 - -
Vian1g02091 389 MobiDBLite consensus disorder prediction 177 191 - -
Vian1g02091 389 Gene3D - 226 343 - -
Vian1g02091 389 ProSiteProfiles PB1 domain profile. 228 332 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02091 Vian-Chr1 25390231 25392950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02091 231 327 B3 DNA Binding Superfamily AT2G46530 36.082 1.10e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vian1g02091 AUX_IAA 1.7e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02091 K14484 - gmx:100789251 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01293 10 21950114 21953578 Vian1g02091 1 25390231 25392950 PCT