Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02080 ATGGAGGCCTTCATGAGCTCCTCCGACTTCTCATCCCTGTGGATGCCCACCCCTCAATCCGCTACCTCTAGCACCACTCCGGGAGCCGACGCTTCTAGAGCCCCGCCGCCACCACCGCCGTCCCAGTCTCAGTCCCTTCTTAACCAGGAGACCTTACAACAACGGCTGCAAACGCTGATCGAAGGTGCCAGAGAGAGCTGGACCTATGCCATTTTCTGGCAATCTTCTTATGACTACTCCTCCGGCGCTTCCCTTCTCGGTTGGGGCGACGGATACTACAAGGGCGAGGAGGACAAAGGAAAAGGAAAAGCCCCCAAGGAGACTTCGTCCGCGGAGCAGGACCACCGTAAGAAGGTTCTCCGCGAGCTCAATTCCTTGATTTCCGGCCCTTCCGCTTCCGCCGATGACGTCGACGAAGAGGTATCCGACACTGAGTGGTTCTTTCTAGTGTCCATGACTCAGTCCTTTGTCAACGGCAGCGGCCTCCCGGGCCAGGCTTTTTTTAATTCCAATCCCGTTTGGGTCACCGGGCCCGACCGGTTATCCGAATCGGCGTGCGAGCGGGCCCGCCAGGCGCAGGTTTTTGGGCTTCAGACTCTGGTCTGCATACCGTCCGCAAACGGCGTCGTTGAGCTGGCGTCTACGGAGGTGATTTTCCAGAACCCTGATCTCATGAGCAAAGTGCGGGATTTGTTCAACTTCAGCAACCCCGACGCGGGTTCCTGGCAGTTGAACTGCGTTGCCACCGATCAGGGCGAGAACGACCCTTCCTCACTCTGGCTCAACCCTTCTTCCTCTATCGAAATCAAGGACACCTCTAACGCCGTTGCACCCGCTTCAGCAAATGCAGCAGTGAGCAAAACGATGCCGTTCGAAACCCCTGGTTCCAGCACTCTAACAGAAACCCCTAGTGCCGCCGCCGCAGCAGCTCACGTCCCCATCCCCAAGAACCAGGGTTTCTTCCCGAGGGAATTAAACTTCTCCAACTCCTTAAAGCCCGAATCCGGTGAAATTCTGAGCTTCGGAGAGAGCAAGAAGAGCTCTTACAATGGGAGTTACTTTCCCGCTGTAGCAGCTGAGGAGACCAACAAGAAGAGAAGGTCTCCTGTTTCTCGCAGCAGCATTGACGATGGAATGCTGTCCTTCACCTCCGGCGTCATTCTACCGGCTTCGAATGTAAAAGCTGGTGGTAGTGGTGGTGGTGCCGGGGGCGGTGATTCCGAAAACTCGGATCTGGAGGCTTCCGTGGTGAAAGAGGCGGACAGCAGGGTGGTGGAACCGGAGAAAAGGCCCCGGAAGAGGGGTCGAAAGCCGGCGAACGGCAGAGAGGAGCCGCTGAATCACGTGGAAGCGGAGAGGCAGAGGAGGGAAAAGCTGAATCAAAGGTTCTACGCGCTTCGTGCGGTGGTTCCAAACGTGTCGAAGATGGACAAGGCGTCGCTGTTGGGCGATGCCATATCCTACATAAACGAGCTGAAGTCAAAGCTGAGTGAGCTTGAATCGGAGAAAGGGGAATTGGAGAAGCAATTGGATTCGGCGAAGAAGGAGCTTGAGCTGTCAACCAAAAACCCTCCTCCTCCTTCTCCTCCACCTGGACCATCTCCATCTAACAAAGAAGCGAAGGAAACGACGAGCAAGCTGATTGATTTGGAAGTAGAGGTGAAGATCATAGGGTGGGACGCCATGATAAGGATCCAATGCAGCAAGAAGAACCACCCTGCGGCAAGGTTGATGGCAGCGTTGAAGGACCTGGACCTGGACGTGCATCACGCCAGCGTCTCCGTGGTCAATGATTTGATGATCCAACAGGCCACCGTCAACATGGGAAACCGGTTTTACACGCAGGAACAGCTCCTGTCGGCGCTATCCTCCAAAATTGGCCATGCACTATAG 1893 0.5563 MEAFMSSSDFSSLWMPTPQSATSSTTPGADASRAPPPPPPSQSQSLLNQETLQQRLQTLIEGARESWTYAIFWQSSYDYSSGASLLGWGDGYYKGEEDKGKGKAPKETSSAEQDHRKKVLRELNSLISGPSASADDVDEEVSDTEWFFLVSMTQSFVNGSGLPGQAFFNSNPVWVTGPDRLSESACERARQAQVFGLQTLVCIPSANGVVELASTEVIFQNPDLMSKVRDLFNFSNPDAGSWQLNCVATDQGENDPSSLWLNPSSSIEIKDTSNAVAPASANAAVSKTMPFETPGSSTLTETPSAAAAAAHVPIPKNQGFFPRELNFSNSLKPESGEILSFGESKKSSYNGSYFPAVAAEETNKKRRSPVSRSSIDDGMLSFTSGVILPASNVKAGGSGGGAGGGDSENSDLEASVVKEADSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKLSELESEKGELEKQLDSAKKELELSTKNPPPPSPPPGPSPSNKEAKETTSKLIDLEVEVKIIGWDAMIRIQCSKKNHPAARLMAALKDLDLDVHHASVSVVNDLMIQQATVNMGNRFYTQEQLLSALSSKIGHAL 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02080 630 Pfam Helix-loop-helix DNA-binding domain 447 492 IPR011598 GO:0046983
Vian1g02080 630 MobiDBLite consensus disorder prediction 518 543 - -
Vian1g02080 630 PANTHER MYC 2 625 IPR045084 GO:0003700|GO:0006355
Vian1g02080 630 CDD bHLH_AtAIB_like 440 516 - -
Vian1g02080 630 FunFam Transcription factor bHLH13 436 510 - -
Vian1g02080 630 MobiDBLite consensus disorder prediction 412 453 - -
Vian1g02080 630 MobiDBLite consensus disorder prediction 522 536 - -
Vian1g02080 630 Gene3D - 435 522 IPR036638 GO:0046983
Vian1g02080 630 SMART finulus 449 498 IPR011598 GO:0046983
Vian1g02080 630 MobiDBLite consensus disorder prediction 1 48 - -
Vian1g02080 630 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 446 512 IPR036638 GO:0046983
Vian1g02080 630 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 232 IPR025610 -
Vian1g02080 630 Coils Coil 482 523 - -
Vian1g02080 630 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 443 492 IPR011598 GO:0046983
Vian1g02080 630 MobiDBLite consensus disorder prediction 1 30 - -
Vian1g02080 630 MobiDBLite consensus disorder prediction 396 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02080 Vian-Chr1 25188344 25190236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02080 1 627 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 55.760 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian1g02080 bHLH-MYC_N 9.5e-55 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02080 K13422 - gmx:100790854 926.391