Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02079 ATGGCGTCCGATGCCGTCACCGACAAGAACATTGTCTTCAGGAAACTCAAGGCTAAGTCTGAAAATAAGATGTGTTTCGATTGCAATGCGAAGAATCCTACCTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATAGATTGCTCCGCCGTTCACCGCAGTCTCGGCGTGCACATCAGCTTCGTGAGGTCTACAAATTTAGACTCATGGAGTCCTGAGCAACTAAAGATGATGAGCTTTGGAGGAAACAATCGTGCACAGGTTTTCTTTAAGCAACATGGTTGGACTGATGGTGGCAAAATAGAGGCTAAATACACATCCAGAGCTGCGGACTTGTATAGGCAACTTCTTTCCAAGGAAGTGGCTAAAAGTATGGCTGAGGACGGAGGCTTGCCTTCATCACCTGTTGCTTCTCAGTCTTCCCAGGGTATTAATGGGCTTCCTGAAATCAGGACCAATGAAGTTCCAAAAGAAAACATTCTGGAAAAGCCTGAAAAGCCTGAGGTCACCTCTTCACCTAGGGCTTCTCACTCAGTAATTTCAAGTACTGTCAAGAAACCTATTGGTGGTAAAAAAGCTGGGAAGGGTGGGGGGCTTGGTGCTCGTAAACTCACTAAAAAGACAAGTGAGTCTATCTATGAGCAGAAGCCTGAGGAAGCCCCTGCTCCTGTTCCATCCTCAACAAACAATATGCCTGCTGGACCAGCTCTGACATCTCGGTTTGAGTATGTAGAAAATGTCCAATCCTCTGAGTTGAATACTGGAGGCTCATCCGTCATGAGTCACGTGTCTCCACCAAAGTCATCAAGCTTTTTTGCAGACTTTGGAATGGATGGTGGCTTTCCAAAGAAATCCGGGCCAAGCTCCTCCAAAGTGCAAATTCAGGAATCTGATGAGGCAAGAAGGAAGTTCTCAAATGCTAAATCTATTTCATCATCCCAATTTTTTGGAGATCACACCAAAGCTGCAGATTTGGATTCTCAAGCTACTTTGTCTAAGTTTTCGGGTTCGACTGCCATCTCCAGTGCCGATCTTTTTGGTGACTCAAAAGACAACGCCATTGATCTTTCTGCCAGTGACCTCATCAATCGATTATCTTTTCAGGCACAACAGGATCTTTCTTCCCTTAAGAACATTGCAGGAGAGACTGGAAAGAAGATCAGTACATTAGCCTCCACATTGATGACTGATCTTCAGGACCGAATCCTCTAA 1212 0.4563 MASDAVTDKNIVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLKMMSFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQLLSKEVAKSMAEDGGLPSSPVASQSSQGINGLPEIRTNEVPKENILEKPEKPEVTSSPRASHSVISSTVKKPIGGKKAGKGGGLGARKLTKKTSESIYEQKPEEAPAPVPSSTNNMPAGPALTSRFEYVENVQSSELNTGGSSVMSHVSPPKSSSFFADFGMDGGFPKKSGPSSSKVQIQESDEARRKFSNAKSISSSQFFGDHTKAADLDSQATLSKFSGSTAISSADLFGDSKDNAIDLSASDLINRLSFQAQQDLSSLKNIAGETGKKISTLASTLMTDLQDRIL 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02079 403 SUPERFAMILY ArfGap/RecO-like zinc finger 12 125 IPR037278 -
Vian1g02079 403 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Vian1g02079 403 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Vian1g02079 403 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Vian1g02079 403 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Vian1g02079 403 MobiDBLite consensus disorder prediction 155 170 - -
Vian1g02079 403 MobiDBLite consensus disorder prediction 282 304 - -
Vian1g02079 403 Pfam Putative GTPase activating protein for Arf 12 108 IPR001164 GO:0005096
Vian1g02079 403 CDD ArfGap_ArfGap2_3_like 8 123 - -
Vian1g02079 403 Gene3D Arf GTPase activating protein 1 135 IPR038508 -
Vian1g02079 403 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 5 403 - -
Vian1g02079 403 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Vian1g02079 403 MobiDBLite consensus disorder prediction 133 148 - -
Vian1g02079 403 MobiDBLite consensus disorder prediction 126 235 - -
Vian1g02079 403 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02079 Vian-Chr1 25142719 25147497 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02079 13 91 C2H2 Transcription Factor Family AT4G21160 46.250 1.34e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02079 K12493 K11855 gmx:100785169 705.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g02079 1 25142719 25147497 Vian1g02079 1 25142719 25147497 ECH