Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02071 ATGGCCGCTGTTGGCAACCCCAGAACGTGGATTCCATATATGAACAGCAAAGACTGTTCTCAAGGGTTTTGCAGCTTGTACTGTCCACAGTGGTGTTACATAGTGTATCCACCTCCACCACCCTTTGAGTACCCTGATGATGATTCAAGCCCAAATTTCTCCCCTCTTGTCATTGCAATCATTGGTATTTTGGCCACTGCTTTTCTTCTGGTCAGTTACTACACTCTCATATCCAAGTACTGTGGCCCCAGAGAATCTTCACGGAGAGACCCAAATGACGACTTGCAAGCCACTCACAATCCCCCTCTCCACGAACCATGGAACGCTTCAACCGCTGGTCTTGACGAGGCTCTAATCAAATCAATTGCAGTTTTCAAGTACAAGAAAGGGGATGCAGGTTCTGTTGAAGTCACCAATTGTTCGGTTTGTCTCAGCGAGTTTGAAGACGACGAAAGTGTTAGACTTTTGCCAAAGTGCAGCCACGTTTTCCATGTTCCTTGCATCGACCCTTGGCTCAAGTCTCACTCCAGCTGCCCCTTGTGTCGTGCTGCCATATTCACTTTCAACGCTTCTGTTCCTCGGGCTCACACCCCAGAAGAAGAAGGTGTCCCTTCTTCAAGGAATGAAACTTCTTCTGAGAATGAAAGTGTTGGAGTGGTGGTGATGTTGGAAGAAGAAAGCATACACCATTCTAGGGCTTATCCAAAGCCTGCATTGCGTGCTTTCAGTGACTTGAGTAGCTTTCAGGGCAGGCACAGAGTGGTTGAGATAAGAGATGAAGTTTGTGAATCCCTTGGTAGGTCAGTGTCCATGGACCATTCGTTTCCAAGTGGAGTTTCTGTTGATGTTTTGCGAATGCATGAAGAGGAAGATTCCCAAATGGAAGGGTGTTGTTCTTCTAGTGAAGCTGGTCCATCAAAGAGATCACGCGGAGAGAGGTACAAAACAAGGGTGTTGCATTGTGTTTTGAGTCCAATTTCAATGAAGAGATCGTTTTCCAGTGACAGATTCTCAGTTGGTAAAAGTAGCAGAGCAAGACAGGGAACTATACCCATCTGA 1059 0.4646 MAAVGNPRTWIPYMNSKDCSQGFCSLYCPQWCYIVYPPPPPFEYPDDDSSPNFSPLVIAIIGILATAFLLVSYYTLISKYCGPRESSRRDPNDDLQATHNPPLHEPWNASTAGLDEALIKSIAVFKYKKGDAGSVEVTNCSVCLSEFEDDESVRLLPKCSHVFHVPCIDPWLKSHSSCPLCRAAIFTFNASVPRAHTPEEEGVPSSRNETSSENESVGVVVMLEEESIHHSRAYPKPALRAFSDLSSFQGRHRVVEIRDEVCESLGRSVSMDHSFPSGVSVDVLRMHEEEDSQMEGCCSSSEAGPSKRSRGERYKTRVLHCVLSPISMKRSFSSDRFSVGKSSRARQGTIPI 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02071 352 PANTHER RING-H2 FINGER PROTEIN ATL16 41 299 IPR044600 GO:0016567|GO:0016740
Vian1g02071 352 SUPERFAMILY RING/U-box 139 188 - -
Vian1g02071 352 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Vian1g02071 352 Pfam Ring finger domain 139 182 IPR001841 -
Vian1g02071 352 CDD RING-H2_EL5-like 140 182 - -
Vian1g02071 352 MobiDBLite consensus disorder prediction 196 215 - -
Vian1g02071 352 MobiDBLite consensus disorder prediction 292 311 - -
Vian1g02071 352 MobiDBLite consensus disorder prediction 84 106 - -
Vian1g02071 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 186 IPR013083 -
Vian1g02071 352 FunFam E3 ubiquitin-protein ligase ATL6 104 187 - -
Vian1g02071 352 SMART ring_2 140 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02071 Vian-Chr1 25012460 25013518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02071 1 227 C3H Transcription Factor Family AT3G03550 48.996 3.65e-64 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02071 - - vun:114176645 642.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g02071 1 25012460 25013518 Vian1g02071 1 25012460 25013518 ECH
Vian10g01108 10 13341875 13342609 Vian1g02071 1 25012460 25013518 PCT