Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02068 ATGGATTACGCTCGAGACGGGAACGTGGTTCAAATAATCACGGGCGGTGGCGGAGGAGGAGAGAGCTGGTCCAGCGATCAAGCCGATTGGGCAACGGAGGATGAGTACCGGTATTGGAACAACAACAACAACAACGGAGACGCGGAATCGACGCCGTCGAACTCGAATTACGAGTCACGGTCGGAGCCGCCTAGCAAAAAGTCCCGGAATTCGCAGGATGGCAGCTCAAACCGCTCAAAGGCTATAGGGAAAATGTTCTTCAAGACGAAACTGTGCTGCAAGTTCAGGGCAGGGACCTGCCCTTACATCACCAACTGCAATTTTGCCCATAGCATTGAGGAGCTACGCCGCCCGCCACCAAATTGGCAGGAGATTGTGGCAGCACACGAGGAGGAGAAGGCAGTGATGGCAGAGCCAAGGGAGGAGTTTCAGATTCCCACTGTGGGGTCTTCCACCTTTGCAGGTGATACGATGCAGAGGTCCTACAAGGGAAGGCATTGTAAGAAGTTTTACACTGAGGAAGGGTGTCCCTATGGGGATAGTTGCACCTTCCTTCATGATGAACAATCAAAGAACCGAGAGAGTGTTGCTATAAGTTTAGGCCCGGGGGGTTATGCTGGCGGTGGTGGTGGTGGAAGCGGTGGCAGTGGTAGTGGTGGGGGCGGTGGGAGTGGAAATGGTGGTGGTGGTGGTAGTGGTGGTGCTAATGCTGCTGGGAATGGGGCTAATTCGAAGCCCTCTAATTGGAAAACCAGGATTTGCAATAAATGGGAGATGACAGGGTATTGCCCCTTTGGCAACAAATGCCATTTTGCTCATGGTGCCACAGAGTTGCACAGATATGGAGGGGGGCTTATGGAAGGAGAAAGCAGAGATGGTGTTTCAGTGGTTGGCTGTGACACGAATAAGGGAGCAGCTTCAAAAGCTTCAGCTGATAACGTTGTTGCTGCGGTTACTCCTGTTGCCCATTCTGATGTATACCATATTGGAGTCCCTTCACAAAGGCCTTCCATTGTGATTCAGAGACCAGGGCAGAGAACTCATCAGAAGTGGAAAGGTCCAGATAAAATCAGTAGGATATATGGTGATTGGATTGATGACATTGAATAG 1110 0.5126 MDYARDGNVVQIITGGGGGGESWSSDQADWATEDEYRYWNNNNNNGDAESTPSNSNYESRSEPPSKKSRNSQDGSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVMAEPREEFQIPTVGSSTFAGDTMQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYAGGGGGGSGGSGSGGGGGSGNGGGGGSGGANAAGNGANSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGESRDGVSVVGCDTNKGAASKASADNVVAAVTPVAHSDVYHIGVPSQRPSIVIQRPGQRTHQKWKGPDKISRIYGDWIDDIE 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02068 369 MobiDBLite consensus disorder prediction 1 79 - -
Vian1g02068 369 Gene3D - 154 201 - -
Vian1g02068 369 ProSiteProfiles Zinc finger C3H1-type profile. 248 276 IPR000571 GO:0046872
Vian1g02068 369 SUPERFAMILY CCCH zinc finger 84 117 IPR036855 GO:0046872
Vian1g02068 369 FunFam zinc finger CCCH domain-containing protein 15-like 242 281 - -
Vian1g02068 369 MobiDBLite consensus disorder prediction 36 61 - -
Vian1g02068 369 FunFam Zinc finger CCCH domain-containing protein 82 118 - -
Vian1g02068 369 SUPERFAMILY CCCH zinc finger 246 279 IPR036855 GO:0046872
Vian1g02068 369 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 249 274 IPR000571 GO:0046872
Vian1g02068 369 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 87 111 IPR000571 GO:0046872
Vian1g02068 369 PANTHER CCCH ZINC FINGER/TIS11-RELATED 225 280 IPR045877 GO:0003729
Vian1g02068 369 SMART c3hfinal6 248 275 IPR000571 GO:0046872
Vian1g02068 369 SMART c3hfinal6 161 188 IPR000571 GO:0046872
Vian1g02068 369 SMART c3hfinal6 86 112 IPR000571 GO:0046872
Vian1g02068 369 ProSiteProfiles Zinc finger C3H1-type profile. 161 189 IPR000571 GO:0046872
Vian1g02068 369 SUPERFAMILY CCCH zinc finger 160 189 IPR036855 GO:0046872
Vian1g02068 369 ProSiteProfiles Zinc finger C3H1-type profile. 86 113 IPR000571 GO:0046872
Vian1g02068 369 FunFam Zinc finger, CCCH-type 155 193 - -
Vian1g02068 369 Pfam CCCH-type zinc finger 165 187 IPR041367 -
Vian1g02068 369 Gene3D - 242 280 - -
Vian1g02068 369 Gene3D - 81 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02068 Vian-Chr1 24965632 24968737 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02068 250 278 C3H Transcription Factor Family AT1G68200 62.069 3.70e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vian1g02068 zf-CCCH 1.2e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02068 - - gmx:100788208 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g02068 1 24965632 24968737 Vian1g02068 1 24965632 24968737 ECH