Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02066 ATGGGTAGGTCACCTAGCAGTAACGAGAGTAATGTTAAGAAAGGGCCATGGACACCGGAAGAAGATGAAAAGCTAATGGATTATATTAGCAAACATGGAAGAGGAACATGGAGAACACTTCCAAAGCATGCTGGTCTAAATAGGAACGGAAAAAGCTGCAGGTTGAGGTGGGAAAATTATCTAAGACCAGATATTAAGAGAGGAAAATTAACTGAAGAGGAGGAGCAATTGATCATCAACCTTCATTCAGTTCTTGGAAACAAGTGGTCAAAGATTGCTACAAGTCTTCCAGGGAGAACTGATAACGAGATCAAGAATTACTGGAACACCACCATAAGAAAAAAGCTTCTCCACATGGGTATTGATCCTGAAACTCACAGGCCAAGAACTGACTTCGATCATCTGATGAATCTTTCCCAGTTGCTTGGCATGTCAAATTTGGGCACATCAATGAGTCCTTGGACCAACCCTACCGGTTTACAAGCAGATGTCACTCAATTAGCCAAACTACAAGTGCTACAGAATATGTTACAACTTATGAACAATTCTTCATTCATTAGCATGACTAATCCTTACCTCGTAGACAGTCAAATTCTCAACCCACCGACATTTGATACATTCCTCCATGGAACAAACACCCTCCAAGTGAGAGATCCAATGTTCAGAGGTCCAGAATATCCAAACCCTACTGCTAACAACATATCCGATCCATTCTCTCAAACACCCAGTGAATATTCTCAGCAGAACATCTTCAAATCAGGGATAGAAAAAGAAAATGAAACTAATCATCAAGAAGTTCGTAGTTATACCAAAAACATTAACACTTCACAACAAAATCAAGCAGAAAATTTACTTCCACCGTTAGTTGCTTCGTGTCCTAGGACAACTACCTTCAACAAAATGGAGAGCAACTATAACGAAGCACAAAAGTCCACAGAGTCACCTTTCTCTACGACTTTTGAGGCTTGGGAGAAGTTTCTCATTGAAGATGATGAAGCAAGCGGTTCCTACTGGAAAGAGATTCTAGACTTGACATCCACTTCTGCATCTCCAAACAGAAAACTTGGTAAACGAAAGTTTAGAGAAAGAAAGAAAGAGAGTAAAGCAGGAAAGGGAGGGCGTGGGGTTGACGATGAGGATTCCGATGTCCTTGGGTTTGACGCGGGTGTTGGCGAAGAGGTTGTCAAAGGCGCCGAACATGACCTGCTCGGCCTCTTCCCTGGTGTGGCATGGTGGGAGGAAGTCGCCGGTAAGGGTGGAGTGGTGGATGAACTTTTGGAAGTGGACGATGAGGTGATTTGGGGGACGGTAGCAGGAGAAGTCCAGGAGAAGTCGAGGAGGTAG 1344 0.433 MGRSPSSNESNVKKGPWTPEEDEKLMDYISKHGRGTWRTLPKHAGLNRNGKSCRLRWENYLRPDIKRGKLTEEEEQLIINLHSVLGNKWSKIATSLPGRTDNEIKNYWNTTIRKKLLHMGIDPETHRPRTDFDHLMNLSQLLGMSNLGTSMSPWTNPTGLQADVTQLAKLQVLQNMLQLMNNSSFISMTNPYLVDSQILNPPTFDTFLHGTNTLQVRDPMFRGPEYPNPTANNISDPFSQTPSEYSQQNIFKSGIEKENETNHQEVRSYTKNINTSQQNQAENLLPPLVASCPRTTTFNKMESNYNEAQKSTESPFSTTFEAWEKFLIEDDEASGSYWKEILDLTSTSASPNRKLGKRKFRERKKESKAGKGGRGVDDEDSDVLGFDAGVGEEVVKGAEHDLLGLFPGVAWWEEVAGKGGVVDELLEVDDEVIWGTVAGEVQEKSRR 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02066 447 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vian1g02066 447 SMART sant 13 63 IPR001005 -
Vian1g02066 447 SMART sant 66 114 IPR001005 -
Vian1g02066 447 MobiDBLite consensus disorder prediction 1 22 - -
Vian1g02066 447 CDD SANT 16 61 IPR001005 -
Vian1g02066 447 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vian1g02066 447 Gene3D - 13 66 - -
Vian1g02066 447 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vian1g02066 447 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Vian1g02066 447 FunFam Transcription factor MYB39 69 130 - -
Vian1g02066 447 Gene3D - 70 116 - -
Vian1g02066 447 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vian1g02066 447 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vian1g02066 447 MobiDBLite consensus disorder prediction 366 381 - -
Vian1g02066 447 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vian1g02066 447 PANTHER F14D16.11-RELATED 1 357 - -
Vian1g02066 447 CDD SANT 71 112 IPR001005 -
Vian1g02066 447 FunFam MYB-related transcription factor 13 66 - -
Vian1g02066 447 MobiDBLite consensus disorder prediction 350 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02066 Vian-Chr1 24929112 24933494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02066 1 354 MYB Transcription Factor Family AT3G02940 43.923 5.28e-86 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian1g02066 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02066 K09422 - gmx:100803906 520.776