Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02065 ATGAACATGTCAGATGGAGAGAAGAAAGAAAAGGGGACACAGCAGGAACGAAAGGTTCCTCTTCTGAAGCTCTTCTCCTTCGCTGACTTGTACGACTGCGTTTTGATGGGTGTCGGATCTGTTGGAGCGTGTGTTCATGGTGCCTCTGTGCCTGTTTTCTTTGTCTTCTTCGGAAAGATTATCAATGTAATAGGTTTGGCTTACCTTTTTCCCAAAGAAGCTTCCCACGAAGTTGCCAAGTATGCGTTGGATTTTGTGTATCTAAGCATAGTAATACTGTTTTCATCTTGGACAGAGGTGGCATGTTGGATGCATACTGGAGAACGTCAAGCTGCAAAGATGAGGATGGCATACTTAAGGTCAATGTTGAATCAAGATATAAGTCTTTTTGATACTGAAGCTTCAACTGGAGAGGTTATTTCTTCTATTACCACTGACATCATCGTTGTTCAAGATGCACTTTCTGAGAAGGTTGGGAACTTCATGCACTACATAAGCCGTTTTATCGCAGGCTTTACCATTGGTTTTATGAGAGTGTGGCAAATAAGTTTAGTGACACTTTCCATTGTGCCCTTAATTGCTATTGCTGGTGGCCTTTACGCTTACGTCACCATTGGCCTTATCGGAAAAGTTCGAAAAGCATATGTGCGAGCTGGTGAAATTGCTGAGGAGGTGATAGGCAATGTGAGAACGGTACAAGCATTTGCAGGGGAAGAAAAAGCAGTGAGATCATACAAAGCAGCTCTGATGAACACATATAGACATGGTCGAAAAGCAGGTTTAGCTAAGGGTCTGGGATTAGGCTCCATGCATTGTGTTCTTTTCCTTTCATGGGCTCTCCTTGTTTGGTTCAATAGCATAGTTGTTCACAAGAATATCGCCAATGGTGGCGATGCTTTCACTACAATGCTCAATGTAGTCATTTCTGGCCTGTCACTTGGTCAGGCAGCACCAGATATTTCTGCATTTATCAGGGCAAAGGCATCAGCTTATCCCATTTTTGAGATGATAGAGAGGGACACCATGAGCAAAGTCAGCTCAGAAAATGGTCAAAAGTTAAGCAAATTGGAAGGTCACGTCCAATTTAAGGATGTCTGTTTTAGTTATCCATCTCGTCCTGATGTGGTTATCTTCAACAACTTTTGTCTTGAGATTCCTCCAGGGAAAATTTTAGCTCTTGTGGGAGGAAGTGGTTCCGGAAAAAGCACAGTTATATCATTGATTGAGCGCTTCTATGAACCACTTTCTGGTGAAATACTATTAGATGGGAACACCATCAGGGAACTTGATCTCAAATGGCTTAGGCAACAGATTGGGCTGGTTAATCAAGAGCCTGCACTTTTTGCTACAAGCATCAGGGAAAACATACTGTACGGAAAAGATGATGCCACTCTTGAAGAAGTAAATCAAGCTGTGATGCTCTCTGATGCTCAGTCTTTCATTAACAATCTTCCTGATGGATTAGATACTCAGGTTGGTGAGAGAGGGATACAACTATCCGGGGGACAGAAACAAAGGATTGCAATATCTCGTGCCATAGTTAAGAATCCATCAATCCTTTTATTAGATGAAGCAACCAGTGCTCTGGATGCAGAGTCTGAGAAAAGTGTACAAGAGGCACTTGATCATGTCATGGTTGGTAGAACAACCGTGATAGTTGCACACAGACTTTCTACCATTAGGAATGCAGATATGATTGTTGTTATTGAGGGAGGGAAGGTGGTGGAAATAGGCAATCACGAAGAACTCATTTCCAACCCAAATAATGTATATGCATCTCTTGTTCAAATCCAAGAAACAGCCTTTTCTCAAGGCCACCTTTCTGTGGATCCTTACTTGGGAGGCTCATCAAGGCGCCTAGGAGAGTCGTCATCCCGCACAACAAGCTTTCGTGGTAGTTTTCGCTCAGACAAAGAATCTACTAGCCGGGCTTTTGGTGGAGTAGAAAGTGTTGGAAGTTCAAGGCATGTATCAGTAAAAAGACTATATTCCATGATTGGTCCTGATTGGCCTTATGGTGTTTGTGGAACCTTGGGTGCATTTATTGCTGGAGCACAAATGCCACTCTTTGCTCTTGGAATCTCTCATGCTCTTGTATCTTATTACATGGATTGGGACACAACACGTCATGAAGTGAAAAAAATTGCATTTCTCTTCTGTGGGGCAGCAGTTTTGACCATCACTGCCCATGCCATTGAACATCTTTCCTTTGGAATCATGGGAGAACGACTTACCCTTCGTGCAAGAGAAAAAATGTTTTCCGCTATTTTAAAGAGTGAAATTAGTTGGTTTGATGACATAAACAACACAAGTTCTATGCTTTCATCACGTTTAGAGACCGATGCAACATTTTTAAGAACTATAATTGTTGATCGTTCGACAATTCTTCTGCAAAATGTTGGTCTGGTTGTTGCTTCATTTATTATTGCCTTCATGTTGAACTGGAGAATCACGCTTGTTGTACTAGCCACGTACCCTTTGATCATTAGTGGTCACATTAGCGAGAAACTATTCATGCAAGGCTTTGGTGGCAACTTGAGCAAAGCATATCTAAAAGCCAACATGTTGGCTGGGGATGCTGTGAGTAATATCCGAACTGTGGCTGCATTTTGTGCTGAACAAAAGGTCCTTGACCTTTATGCTAATGAGCTTGTGGAGCCTTCAAAGCGTTCATTCAATAGAGGTCAAATTGCTGGCATATTCTATGGCATTTCCCAGTTCTTTATTTTCTCATCTTATGGCCTTGCATTGTGGTATGGATCTGTGTTGATGGAGAAAGAGCTTTCTAGCTTCAAATCAATTATGAAGTCGTTCATGGTTTTGATTGTAACAGCACTAGCTATGGGGGAGACTTTAGCACTGGCACCTGATCTTTTGAAAGGAAATCAAATGGTTGCATCCATCTTCGAAGTGATGGATAGAAAGACAGGAATATTAGGTGATGTTGGAGAAGAGTTGAAGACAGTGGAAGGAACAATTGAGTTAAAAAGAATCCGTTTCAACTATCCTTCAAGGCCAGACGTGGTTATTTTCAATGATTTCAATCTCACTGTGCCTGCAGGAAAGAATATTGCCCTTGTGGGGCATAGTGGATGTGGTAAAAGTTCAGTAATCTCCCTTATACTCAGATTTTACGATCCAACATCTGGGAAGGTGATGATTGATGCGATTCATCCAATTCTTACAGGAAAAGACATCAAGAAACTCAAGTTGAAATCCCTTAGGAAACATATTGGTCTAGTGCAACAAGAACCTGCTCTTTTTGCAACATCAATATATGAAAACATTCTTTATGGAAAGGAAGGAGCTTCAGAAGGTGAAGTGATTGAAGCAGCTAAACTTGCCAATGCTCATAGCTTTATCAGTGCTCTTCCTGAGGGCTACTCCACCAAAGTAGGTGAGAGAGGAGTTCAACTGTCTGGTGGCCAGAAGCAAAGGGTAGCTATTGCAAGGGCTGTTTTGAAAAACCCTGAAATTTTGCTGCTAGATGAAGCCACCAGTGCACTGGATTTGGAGTCAGAGCGTGTGGTGCAACAAGCTCTGGACAAATTGATGCAGAACAGAACAACAGTTATAGTGGCACATAGGCTATCCACAATAAAAAATGCAGACCAAATAGCAGTTTTAGAGGATGGAAAGATAATTCAGCGAGGGATTCATGCAAGACTTGTAGAAATCACGGATGGGGCATACTACAAATTAGTCAGCCTTCAGCAACATGAACAGCATGTACAAGAACATTTTGATTGA 3750 0.4181 MNMSDGEKKEKGTQQERKVPLLKLFSFADLYDCVLMGVGSVGACVHGASVPVFFVFFGKIINVIGLAYLFPKEASHEVAKYALDFVYLSIVILFSSWTEVACWMHTGERQAAKMRMAYLRSMLNQDISLFDTEASTGEVISSITTDIIVVQDALSEKVGNFMHYISRFIAGFTIGFMRVWQISLVTLSIVPLIAIAGGLYAYVTIGLIGKVRKAYVRAGEIAEEVIGNVRTVQAFAGEEKAVRSYKAALMNTYRHGRKAGLAKGLGLGSMHCVLFLSWALLVWFNSIVVHKNIANGGDAFTTMLNVVISGLSLGQAAPDISAFIRAKASAYPIFEMIERDTMSKVSSENGQKLSKLEGHVQFKDVCFSYPSRPDVVIFNNFCLEIPPGKILALVGGSGSGKSTVISLIERFYEPLSGEILLDGNTIRELDLKWLRQQIGLVNQEPALFATSIRENILYGKDDATLEEVNQAVMLSDAQSFINNLPDGLDTQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDHVMVGRTTVIVAHRLSTIRNADMIVVIEGGKVVEIGNHEELISNPNNVYASLVQIQETAFSQGHLSVDPYLGGSSRRLGESSSRTTSFRGSFRSDKESTSRAFGGVESVGSSRHVSVKRLYSMIGPDWPYGVCGTLGAFIAGAQMPLFALGISHALVSYYMDWDTTRHEVKKIAFLFCGAAVLTITAHAIEHLSFGIMGERLTLRAREKMFSAILKSEISWFDDINNTSSMLSSRLETDATFLRTIIVDRSTILLQNVGLVVASFIIAFMLNWRITLVVLATYPLIISGHISEKLFMQGFGGNLSKAYLKANMLAGDAVSNIRTVAAFCAEQKVLDLYANELVEPSKRSFNRGQIAGIFYGISQFFIFSSYGLALWYGSVLMEKELSSFKSIMKSFMVLIVTALAMGETLALAPDLLKGNQMVASIFEVMDRKTGILGDVGEELKTVEGTIELKRIRFNYPSRPDVVIFNDFNLTVPAGKNIALVGHSGCGKSSVISLILRFYDPTSGKVMIDAIHPILTGKDIKKLKLKSLRKHIGLVQQEPALFATSIYENILYGKEGASEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDLESERVVQQALDKLMQNRTTVIVAHRLSTIKNADQIAVLEDGKIIQRGIHARLVEITDGAYYKLVSLQQHEQHVQEHFD 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02065 1249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 993 1236 IPR003439 GO:0005524
Vian1g02065 1249 Gene3D ABC transporter type 1, transmembrane domain 23 962 IPR036640 GO:0005524|GO:0016020
Vian1g02065 1249 ProSitePatterns ABC transporters family signature. 499 513 IPR017871 GO:0005524|GO:0016887
Vian1g02065 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 987 1238 IPR027417 -
Vian1g02065 1249 Gene3D - 350 599 IPR027417 -
Vian1g02065 1249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 360 596 IPR003439 GO:0005524
Vian1g02065 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 350 598 IPR027417 -
Vian1g02065 1249 MobiDBLite consensus disorder prediction 617 640 - -
Vian1g02065 1249 SUPERFAMILY ABC transporter transmembrane region 660 974 IPR036640 GO:0005524|GO:0016020
Vian1g02065 1249 CDD ABC_MTABC3_MDL1_MDL2 993 1238 - -
Vian1g02065 1249 FunFam ABC transporter B family member 19 350 599 - -
Vian1g02065 1249 PANTHER ABC TRANSPORTER B FAMILY 6 602 IPR039421 -
Vian1g02065 1249 Pfam ABC transporter 1012 1167 IPR003439 GO:0005524
Vian1g02065 1249 SUPERFAMILY ABC transporter transmembrane region 18 330 IPR036640 GO:0005524|GO:0016020
Vian1g02065 1249 FunFam ABC transporter B family member 1 23 360 - -
Vian1g02065 1249 CDD ABC_6TM_Pgp_ABCB1_D1_like 36 333 - -
Vian1g02065 1249 ProSitePatterns ABC transporters family signature. 1139 1153 IPR017871 GO:0005524|GO:0016887
Vian1g02065 1249 Gene3D - 983 1249 IPR027417 -
Vian1g02065 1249 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 676 960 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian1g02065 1249 FunFam ABC transporter B family member 2 794 990 - -
Vian1g02065 1249 Pfam ABC transporter transmembrane region 675 946 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian1g02065 1249 Pfam ABC transporter transmembrane region 41 309 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian1g02065 1249 Pfam ABC transporter 379 527 IPR003439 GO:0005524
Vian1g02065 1249 CDD ABC_MTABC3_MDL1_MDL2 360 598 - -
Vian1g02065 1249 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 325 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian1g02065 1249 CDD ABC_6TM_Pgp_ABCB1_D2_like 663 978 - -
Vian1g02065 1249 FunFam ABC transporter B family member 4 983 1245 - -
Vian1g02065 1249 SMART AAA_5 1020 1225 IPR003593 GO:0016887
Vian1g02065 1249 SMART AAA_5 387 581 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02065 Vian-Chr1 24908004 24918387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02065 38 625 Calmodulin-binding Proteins AT2G36910 38.423 1.02e-113 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02065 K05658 - gmx:100809752 2201.79