Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02058 ATGGAGGGAGCAGGCAGTGGGGGCGGAGAAGTGTCGACGGCGGGGCCGACACCGATTCCGAACGCTAACGCGCCGCCGCCTTTCCTGAGCAAGACGTATGACATGGTGGACGACCCTTCGACGGACTCAATTGTGTCGTGGAGTCCAATGAACAACAGCTTCATTGTTTGGAACCCTCCGGAGTTCGCCAGAGACCTTTTGCCCAAACACTTCAAGCACAATAACTTCTCCAGCTTCGTTCGCCAGTTAAACACCTACGGTTTTAGAAAGGTAGACCCGGATCGCTGGGAGTTTGCAAATGAGGGATTTTTAAGGGGTCAAAAGCACTTGCTTAAGACCATATCTCGGCGGAAACCTGCCCATGGTCATAATCATCAACAAGCACAACAAGTACACGGACAGAATTCATCGGTTGGGGCTTGTGTAGAAGTTGGGAAGTTTGGACTTGAGGAAGAGGTTGAAATTCTCAAGAGAGATAAGAATGTGCTCATGCAAGAGCTTGTGAGATTGAGGCAGCAGCAGCAATCTACTGATAACCAGCTGCAGACTATGGTTCAGCGCCTTCAGGGAATGGAGCAACGGCAGCAACAAATGATGTCATTCCTTGCAAAGGCTGTTCAGAGCCCTGGTTTCTTATCTCAATTTGTACAACAGCAAAATGATAGTAATAGACGCTTAACAGAGGCAAATAAAAAACGTCGACTGAAGCAGGAAGGTATTGGTGAAATGGAACATACAGCTGCTTCTGATGGGCAAATTGTTAAATATCAACCTCTGATAAATGAAGCAGCAAAAGCAATGGTAAGGCAAATAATGAAATTGGATGCTTCTCGACAAGAATCTTTCAGTAATAACCCCGATAATTATTTGATTGGTGATCATTCATCACCATCCAGTGAAATGGACAGGGGAAACTCTTTGAGTCGATCTTCTGGAGTAACACTTCAAGAGGTCCCTCCAACTAAGGTGCAGTCTTCTTATGTTCCATCTGCAGCAAGGACTCAAGGGCACGGTCCTTCAACAGGAAAATCTGAGATTCTATCTTCTTCCCAAGTTGCAGCCTGTGGAGAAGTTACATATCCTAATCTAAATGTTTCAGTTGGGGAACCTAATGCACCTGCTATCCCTGTTACTCAAACAGATGAAATAATGCCGGACCTTGCTACAATACCAGATATAGTAGCAGGAAACATTCTCAATATTCCTCAAGAAAATTATATGGCACCAGAAACTGGTGGTGACGGATACATGGATCCTACTTCATTTGGGGTGAATATGTCACTACCCCTTGATTTTGATAGTATTTCAACTGAACCAGACATCGATGATTTGTTGAACAATCCTCACTTTTGGGATGATATTGTGCGAACTCCGGTGTCAGAGGATATTGAAACGAATGGTACTGAAGTATTCTATGAGAATGAGTTGCAGCCAACTGAAAATGGATGGGAAAAATCTCAACATATGGACCTACTTACTGAACAGATGGGCTTACTTTCTTCTGATGCAAAAAAAAACTGA 1521 0.4418 MEGAGSGGGEVSTAGPTPIPNANAPPPFLSKTYDMVDDPSTDSIVSWSPMNNSFIVWNPPEFARDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTISRRKPAHGHNHQQAQQVHGQNSSVGACVEVGKFGLEEEVEILKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFLSQFVQQQNDSNRRLTEANKKRRLKQEGIGEMEHTAASDGQIVKYQPLINEAAKAMVRQIMKLDASRQESFSNNPDNYLIGDHSSPSSEMDRGNSLSRSSGVTLQEVPPTKVQSSYVPSAARTQGHGPSTGKSEILSSSQVAACGEVTYPNLNVSVGEPNAPAIPVTQTDEIMPDLATIPDIVAGNILNIPQENYMAPETGGDGYMDPTSFGVNMSLPLDFDSISTEPDIDDLLNNPHFWDDIVRTPVSEDIETNGTEVFYENELQPTENGWEKSQHMDLLTEQMGLLSSDAKKN 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02058 506 MobiDBLite consensus disorder prediction 1 26 - -
Vian1g02058 506 SMART hsfneu3 24 117 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian1g02058 506 Coils Coil 146 173 - -
Vian1g02058 506 Pfam HSF-type DNA-binding 28 117 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian1g02058 506 ProSitePatterns HSF-type DNA-binding domain signature. 67 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian1g02058 506 Gene3D - 21 118 IPR036388 -
Vian1g02058 506 PRINTS Heat shock factor (HSF) domain signature 28 51 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian1g02058 506 PRINTS Heat shock factor (HSF) domain signature 79 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian1g02058 506 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian1g02058 506 SUPERFAMILY "Winged helix" DNA-binding domain 23 117 IPR036390 -
Vian1g02058 506 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 22 305 IPR027725 -
Vian1g02058 506 MobiDBLite consensus disorder prediction 279 346 - -
Vian1g02058 506 FunFam Heat shock transcription factor 1 21 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02058 Vian-Chr1 24820424 24825269 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02058 7 500 HSF AT1G32330 54.028 2.35e-167 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vian1g02058 HSF_DNA-bind 1.9e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02058 K09419 - gmx:732544 822.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g02058 1 24820424 24825269 Vian1g02058 1 24820424 24825269 ECH