Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02056 ATGAGGGAGCAAGCAGGGTTCAAGTTTACAACTAGAGTGCAGCCCCTTCGTCTTGCCGAATGGGATACCGAAGACAAAGTGGTGTTTTTCATGAGTGGGATAGATTATACATTTCGTGATTTTGAAAAGATGGCAAACAAGTCTTTTGCTCAAAGATATTGCAGTGCTGGATGTCTTCCTGCCTCATACTTGGAGAAAGAATTTTGGAGTGAAATTGGTTGTGGGAAGATGGAAACTGTTGAATATGCATGTGACGTTGATGGTAGTGCCTTTTCATCTTTGCCCTCTGATCAACTTGGGAACAGCAAATGGAATTTGAAGAAATTTTCGTGGTTGCCCAAGTCTATTTTGCGGCTCTTGAAAACATCAATTCCGGGAGTAACAGAACCCATGCTATACATTGGAATGCTGTTTAGCATGTTTGCTTGGCACGTGGAAGATCATTATTTATACAGGGTGCTAGATAAGAGAGTAACAGGTCACGCAGCATTGGAATTTGAAAGGGTGGTGAGACAACACGTGTATACTAATGATATTTTGTCAACTGGTGGAGAAGATGGAGCCTTTGATGTTCTCCTGGGGAAAACAACTATGTTCCCACCAGATATTTTGTTGGAGCATGAAGTCCCTGTCTACAAGGCTGTTCAAAATCCAGGGGATTACGTAATAACTTTCCCCAGAGCATATCATGCTGGCTTTAGTCATGGCTTCAACTGTGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCTCTAGGGGCTATTGCAAGTCAAAGATATGCACTTCTTCACAGAGATCCTTTGCTTCCCCATGAAGAACTTTTATGCAAAGAAGCAATGCTTCTGTATGCAACATTAAGACTTGAAGATTCAGACATTTTCCCCGAAGAGTTGTTATCTCGTGATTGTGTTAAGATTTCTTTTGTTAATTTGATGCGCTTTCAACATTGCGCTCGTTGGCTGTTAATGAAATCAAGGGCTTGTACAAGTGTTTCTTCACATTCTCAGGGTACAATTCTCTGTAGCCTCTGCAAACGGGACTGCTATGTAGCTTATGTTGACTGTGAATGTCACCTGCACCCAGTATGCCTTCGCCATGATGTAGAATCTCTTGACTTCACCTGTGGGACCAAGCGCACACTTTATCTTAGGGAAGATACTCCAGACATGGAAGCTGCGGCCAAGAGATTTGAGCAGGAAGATGGAATTTTGAAAGAGATACTTAAGGAGATGAAAAGTGAAAAAAATATCTATTCATGCCCTTTGTCGAACATGTTCCAGATGGCTGAGGCTAATGGATATACACCGTATTGTGAGATGAAATTTGATTCTATTGCTAATTTTTGTACCACCTCAAAGCTGTCAATAAACAATCAAGAGCATATGCGAAGTCAATTTGTTTCAAGACCTGAGGTATCTTCTGCTTCATCTACGCTATGTTCTCTTTCCAAACCTCCTGAGATCTCTGCTTCCAATATCGATGAGGTGAATGCTAACTTTAAATTAGGCAGTCCTGATTTTGAAGAGAATTGTGAAAGAATATCCAATGATACTTCTGAGTCTTTTCAATCCTCTCTTCAGTATGAATGCCCTAATAAATCTATGGGTAATGTGCGTAGATTAGAGAAGAAGCTTATTGTGGATAACAAGAGTGACGATTCTGATTCAGGGATTTTTAGGGTTAAGCGCCCTTCTTCTCTTAAGGCAGATAGGAGAAATATAAGAGGTGCTACGTTTTCAACAAATTCTGGACAGCAGGAACTCAAACAATTGAAGAAAGACCTTCACGAAGGAAGGAGTGTGCCACAAGTAGATATGAGAAAAAGAAAGGAAAGGAGTTACAAATATAGTGACGGTGTTAGTCATAAGGTTAATAATGGCGAAATTTCCTCGAGGGACAAATTTGCAAGGGGAAATAGCATTCCCGTATCCGTAAGATATAAGAAGCGAAGTAATGGGGAAGTTAATAGACGACGACATCATTGCCGGACAGATAGGTTGCTGCATTCCATAGAGGTTGCTCCAAAGCGCCTTAAAGCTCGAGACCCTTCATTTATGGGGTTAAACAGCAGATTGAATTGA 2085 0.4091 MREQAGFKFTTRVQPLRLAEWDTEDKVVFFMSGIDYTFRDFEKMANKSFAQRYCSAGCLPASYLEKEFWSEIGCGKMETVEYACDVDGSAFSSLPSDQLGNSKWNLKKFSWLPKSILRLLKTSIPGVTEPMLYIGMLFSMFAWHVEDHYLYRVLDKRVTGHAALEFERVVRQHVYTNDILSTGGEDGAFDVLLGKTTMFPPDILLEHEVPVYKAVQNPGDYVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASQRYALLHRDPLLPHEELLCKEAMLLYATLRLEDSDIFPEELLSRDCVKISFVNLMRFQHCARWLLMKSRACTSVSSHSQGTILCSLCKRDCYVAYVDCECHLHPVCLRHDVESLDFTCGTKRTLYLREDTPDMEAAAKRFEQEDGILKEILKEMKSEKNIYSCPLSNMFQMAEANGYTPYCEMKFDSIANFCTTSKLSINNQEHMRSQFVSRPEVSSASSTLCSLSKPPEISASNIDEVNANFKLGSPDFEENCERISNDTSESFQSSLQYECPNKSMGNVRRLEKKLIVDNKSDDSDSGIFRVKRPSSLKADRRNIRGATFSTNSGQQELKQLKKDLHEGRSVPQVDMRKRKERSYKYSDGVSHKVNNGEISSRDKFARGNSIPVSVRYKKRSNGEVNRRRHHCRTDRLLHSIEVAPKRLKARDPSFMGLNSRLN 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02056 694 ProSiteProfiles JmjC domain profile. 101 262 IPR003347 -
Vian1g02056 694 MobiDBLite consensus disorder prediction 581 626 - -
Vian1g02056 694 SUPERFAMILY Clavaminate synthase-like 32 278 - -
Vian1g02056 694 MobiDBLite consensus disorder prediction 590 619 - -
Vian1g02056 694 Pfam JmjC domain, hydroxylase 131 245 IPR003347 -
Vian1g02056 694 PANTHER LYSINE-SPECIFIC DEMETHYLASE 7 609 - -
Vian1g02056 694 Gene3D Cupin 1 294 - -
Vian1g02056 694 SMART cupin_9 98 262 IPR003347 -
Vian1g02056 694 Pfam C5HC2 zinc finger 342 393 IPR004198 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02056 Vian-Chr1 24788406 24796374 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02056 98 276 C2H2 Transcription Factor Family AT5G04240 43.915 2.80e-44 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vian1g02056 JmjC 3.3e-24 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02056 - - vra:106765852 1229.93