Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02055 ATGGAACTATTCCCAGTACAGCCAGATTTGTCCTTGAAAATTAACCCTCCAAACACCAAACCCACATCAAGTAATTGGAACAAGAGAAGCACAGAAGATGAGATGGATTTGGGGTTTTGGAAGAGAGCTTTGGAATCAAAAACAGTCAAAACAGACCTCTCCCTCTCTAATCCAAGGGCTTTTTCTTCTTCTTCTTCTTCTTGTTCTTCAAACACCAACACCCCTAACCCCAACCCAATCCTTATCCATCATCACTTCCAAAACAACACTGCTAATACTAACAAACACAACCCCATCCAACAAAACCATTTCTTTCACCACCAAGACCTAGGTTTTCTCAGACCCATAAGAGGAATCCCACTCTACCAAAACCCTCCTTTCTCATTTCCTCCCACTTCTTCAACCCCTTTCCTTAACCCAGCCTTCCTCTCACGCTTCCCTCCCAAGCGTAACATCAGGGCTCCCAGGATGCGTTGGACCACTGCACTCCATGCTCGCTTCGTCCATGTCGTTCAACTTTTGGGTGGCCATGAAAGGGCTACACCCAAATCAGTTCTCGAGCTAATGGATGTAAAGGATCTCACTTTAGCCCATGTTAAATCTCACTTGCAGATGTACCGAACAGTGAAAACTACTGATAGAGCTGCGGCATCATCGGGGCAATCTGATACTTATGACAATGGGTCTTCTGGAGATACTTCTGAAGACTTGGTGTTTGATAGAAACTCTCCAAGGAGGTCTGATCTATCCATTAGGCAGGCAAGAACAAGTGTTAATCAAGATATTGGAAATGGTGGCCTTTGGAACAACTCTTCAAGCAGGCAAGCCTTCTTGCATGGGAAGCCAAACCTTGATTCCATTGGGAACGTGCCTTCTGCTGAGGGAATGGACCCAAAGGGCCAAAGCAATGAAATATCAGATGGAAACTCATCCTCAGACATTGCAGAATCAAGTGGCAAGAAGCTAAATTTGGATTTGGAGTTCACCTTAGGTCGATCACTTTGA 1005 0.4488 MELFPVQPDLSLKINPPNTKPTSSNWNKRSTEDEMDLGFWKRALESKTVKTDLSLSNPRAFSSSSSSCSSNTNTPNPNPILIHHHFQNNTANTNKHNPIQQNHFFHHQDLGFLRPIRGIPLYQNPPFSFPPTSSTPFLNPAFLSRFPPKRNIRAPRMRWTTALHARFVHVVQLLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDTYDNGSSGDTSEDLVFDRNSPRRSDLSIRQARTSVNQDIGNGGLWNNSSSRQAFLHGKPNLDSIGNVPSAEGMDPKGQSNEISDGNSSSDIAESSGKKLNLDLEFTLGRSL 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02055 334 MobiDBLite consensus disorder prediction 273 318 - -
Vian1g02055 334 MobiDBLite consensus disorder prediction 54 78 - -
Vian1g02055 334 MobiDBLite consensus disorder prediction 213 249 - -
Vian1g02055 334 SUPERFAMILY Homeodomain-like 152 208 IPR009057 -
Vian1g02055 334 MobiDBLite consensus disorder prediction 213 237 - -
Vian1g02055 334 NCBIfam myb-like DNA-binding domain, SHAQKYF class 155 208 IPR006447 GO:0003677
Vian1g02055 334 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 8 333 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vian1g02055 334 Pfam Myb-like DNA-binding domain 156 207 IPR001005 -
Vian1g02055 334 FunFam Myb family transcription factor 153 211 - -
Vian1g02055 334 MobiDBLite consensus disorder prediction 12 26 - -
Vian1g02055 334 MobiDBLite consensus disorder prediction 1 30 - -
Vian1g02055 334 Gene3D - 154 211 - -
Vian1g02055 334 MobiDBLite consensus disorder prediction 302 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02055 Vian-Chr1 24777781 24782302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02055 1 277 G2-like Transcription Factor Family AT4G17695 41.009 4.37e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vian1g02055 Myb_DNA-binding 2.4e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02055 - - pvu:PHAVU_003G283000g 470.7