Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02054 ATGGAGGAGGAATCTAATCCCACACTCCATGTTGGTATTACTGCATTTCCACTTCCCCAAAAAGGCAGGAGGGAAGACGGGGATGAGCAAGAGAATCAAGGAAGTCCCAAAAGGCAGAAGAGAGATGAAGTTGCTGAGGAGCTCAAGAATGAGTTTCAGGAGGATATCAATATCTACGAGGGTGATAACTCTGAAGAAAGATATGAAGAAACAGAAGAGAAAACAATGGAAGTTTTGATGGACACCACATTAGATGCTCAAGAATGTGACTCAAAAAATGTTGAAAGTGATTCTTCTAGTGATAGTTCAGATGACAACAACCATGATGACGATAACTCTGATTTTATTGACGAGCCACATATGGCTACATATCCTTTGAAAAGTTCAGAGAACAGTGAAGAAGAAATTGAGGAAAATGCCTCTAAAACTCTGCAAGTAAATCCTGAAATGCTAACTACTTTGAAAGAACGAAGTGCCGGATCAAAGACAATATATACTAAAAACTTATCATATAGTGTGGAACGTGCTGATCTGGAAGATCTTTTCAAAGAGTGTGGAGAAATTGTTGATGTTCGTCTACATACAGATGATGAAGGGAGGTTTAGAGGCTTTGGTCATGTTGAGTTTGCGACAGAAGAAGCAGCGCTAAAAGCACTTAAGTTAAATAATACAGAATTATTGAGATGTCGCATCAGAGTTGGTGTAGCTCGAGAAAGGCGAAAATATACCCCCAACAGAAGTTTCCATGTTAATTATTTTAGCAACAAATATCAAGGTAGTGAAAGAATTCAGCCGGTGAGATGTTCAGAGATTTCAGAAGATTGTGAGCAAGAAACTGAGGAAAAAGACTCCAAAGCTGTTCAGACAATTCCAAAAGATCAAGCTACTCGGAAGGAACAAAAAGCTACTTCGAAGACAATATATGCTAGAAATTTGTCTTATAGTGTGGAGAGGGATGATATGGAAATTCTTTTCAAAGAGTGTGGAGAAATTGTTGATATTCGTCTACAAAGAGATCATGAAGGGAGGTCAAGAGGCTTTGGGCATGTTCAGTTTGCAACTACAGAAGCTGCACAAAAGGCTCTTGGGTTGGATAATAAAAAATGGTTCGGACGATCCATCAGTGTTGGCATAGCTCAAGAAAGGAGTGAATATGCCTCCAATAGAAGTTTTAGCAACTGGAGCAATTCATTCAATAAGCGCGAAAGAATCGATCCCATCAAAAGGACATGGAGTTCAGAGTCCTGTGAGGAAGATATTGAGGGAAAAGCCGTAAAAGATCCTTGGAAAACTTCTAGATTGTTGGCTACTCTGAAAGAAGAAAATGCTTCATCAAAGACAATATATGTCACAAACTTGTCATACAGAGCGGAAAAGGCTGATGTGGAAAATTTTTTCAAAGAATGTGGAGAAATCGTGGAAGTTAGGCTACACAGAGATAATGAGGGGAGGTTAAAAGGCTTTGGACATATTACGTTTGCAACAGCAGAAGCTGCACTAAAAGCTCTTGAATTGGATAATACAGAGTTGTTCAGACGTTGCATTGTAGTTCAAATAGCTCGAGGAAAGGGTGAACGTACCTGGAATAGAAGCAACTCATTCCAAAAGCATGAAAGATTTCAGCCCATGAAGGCTATAGAGCATTCCGAGGACTGTAAGGAAGAAATTGAGGAAAAAGCCCACGAAAGTCCTCATGAAAGTCCTAAAACGCTAGCTACTCTGAAAGAACAAAATGCTTCACCAAAGACGATATTTGTTGGAAACTTGTCACATGAAGTGGAACAGGCTGATGTGGAAAATCTTTTCAAAGAATGTGGAGGAATTGCTTATCTTCATCCACATACAGATCATGAGGGGAGGCCTAAAGGCTTTGTACATGTTGAGTTTTCAACGGCTGAAGCAGCACAAAAGGCTCTTAAGTTGAATCATACAGAATTTTTTGGACGTACCATTACAGTTGAATTAGCTCGAGAAAAAAATGATAACTACAGTAGAAGCAACAACTCATTCCAGAAGGGTGAAAGAATTCAATCTCTAACTGTATTTGTCAAGGGTTTTGATACTTCACTCGAGGAAAAAGAGATAAAAGCTAGCCTGGAAGAGCATTTTGGTTCTTGTGGAGAGATTACCAGGATATTGATTCCGAAAATTTATGATTCTGGTGCATTTAAGGGCTTCTTCTCCTCCATTCCAGGGCCATCCCCAGCCGCAGTTTGTTGA 2220 0.3959 MEEESNPTLHVGITAFPLPQKGRREDGDEQENQGSPKRQKRDEVAEELKNEFQEDINIYEGDNSEERYEETEEKTMEVLMDTTLDAQECDSKNVESDSSSDSSDDNNHDDDNSDFIDEPHMATYPLKSSENSEEEIEENASKTLQVNPEMLTTLKERSAGSKTIYTKNLSYSVERADLEDLFKECGEIVDVRLHTDDEGRFRGFGHVEFATEEAALKALKLNNTELLRCRIRVGVARERRKYTPNRSFHVNYFSNKYQGSERIQPVRCSEISEDCEQETEEKDSKAVQTIPKDQATRKEQKATSKTIYARNLSYSVERDDMEILFKECGEIVDIRLQRDHEGRSRGFGHVQFATTEAAQKALGLDNKKWFGRSISVGIAQERSEYASNRSFSNWSNSFNKRERIDPIKRTWSSESCEEDIEGKAVKDPWKTSRLLATLKEENASSKTIYVTNLSYRAEKADVENFFKECGEIVEVRLHRDNEGRLKGFGHITFATAEAALKALELDNTELFRRCIVVQIARGKGERTWNRSNSFQKHERFQPMKAIEHSEDCKEEIEEKAHESPHESPKTLATLKEQNASPKTIFVGNLSHEVEQADVENLFKECGGIAYLHPHTDHEGRPKGFVHVEFSTAEAAQKALKLNHTEFFGRTITVELAREKNDNYSRSNNSFQKGERIQSLTVFVKGFDTSLEEKEIKASLEEHFGSCGEITRILIPKIYDSGAFKGFFSSIPGPSPAAVC 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02054 739 MobiDBLite consensus disorder prediction 21 79 - -
Vian1g02054 739 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 238 IPR000504 GO:0003723
Vian1g02054 739 MobiDBLite consensus disorder prediction 88 106 - -
Vian1g02054 739 MobiDBLite consensus disorder prediction 1 148 - -
Vian1g02054 739 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 446 522 IPR000504 GO:0003723
Vian1g02054 739 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 584 652 IPR000504 GO:0003723
Vian1g02054 739 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 448 515 IPR000504 GO:0003723
Vian1g02054 739 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 374 IPR000504 GO:0003723
Vian1g02054 739 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 232 IPR000504 GO:0003723
Vian1g02054 739 Gene3D - 126 261 IPR012677 -
Vian1g02054 739 Gene3D - 542 660 IPR012677 -
Vian1g02054 739 SMART rrm1_1 163 234 IPR000504 GO:0003723
Vian1g02054 739 SMART rrm1_1 306 377 IPR000504 GO:0003723
Vian1g02054 739 SMART rrm1_1 447 518 IPR000504 GO:0003723
Vian1g02054 739 SMART rrm1_1 583 654 IPR000504 GO:0003723
Vian1g02054 739 SUPERFAMILY RNA-binding domain, RBD 155 258 IPR035979 GO:0003676
Vian1g02054 739 MobiDBLite consensus disorder prediction 279 302 - -
Vian1g02054 739 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 582 658 IPR000504 GO:0003723
Vian1g02054 739 Gene3D - 390 533 IPR012677 -
Vian1g02054 739 Gene3D - 262 389 IPR012677 -
Vian1g02054 739 Gene3D - 661 727 IPR012677 -
Vian1g02054 739 SUPERFAMILY RNA-binding domain, RBD 581 726 IPR035979 GO:0003676
Vian1g02054 739 SUPERFAMILY RNA-binding domain, RBD 440 535 IPR035979 GO:0003676
Vian1g02054 739 SUPERFAMILY RNA-binding domain, RBD 290 394 IPR035979 GO:0003676
Vian1g02054 739 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 426 530 - -
Vian1g02054 739 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 381 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02054 Vian-Chr1 24729050 24755727 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02054 448 710 Eukaryotic Initiation Factors Gene Family AT2G36660 21.190 4.75e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02054 - - pvu:PHAVU_003G282900g 1132.86