Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02050 ATGGCTCGCTCTGTGCCTTTGGTCTCAACCATCTTTCTGCTTCTTCTGCTTCTGGTGGCCACCGAGATGGGGCCAACAATGGTGGCGGAGGCAAGGACATGTGAGTCTCAGAGCCACCGTTTCAAGGGACCATGCGTGAGTGACACCAACTGCGCTTCTGTTTGCCGAACTGAACGTTTCAGCGGAGGACATTGCCGTGGCTTCCGTCGCAGATGCTTCTGCACTAAACATTGTTAA 237 0.5401 MARSVPLVSTIFLLLLLLVATEMGPTMVAEARTCESQSHRFKGPCVSDTNCASVCRTERFSGGHCRGFRRRCFCTKHC 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02050 78 Gene3D - 32 78 IPR036574 -
Vian1g02050 78 PANTHER DEFENSIN-LIKE PROTEIN 1 7 78 - -
Vian1g02050 78 PRINTS Purothionin signature 63 77 IPR008176 GO:0006952
Vian1g02050 78 PRINTS Purothionin signature 33 48 IPR008176 GO:0006952
Vian1g02050 78 Pfam Gamma-thionin family 32 78 - -
Vian1g02050 78 SUPERFAMILY Scorpion toxin-like 32 78 IPR036574 -
Vian1g02050 78 CDD Knot1 43 75 IPR003614 GO:0006952
Vian1g02050 78 ProSitePatterns Gamma-thionins family signature. 32 55 IPR008176 GO:0006952
Vian1g02050 78 SMART gth_4 33 78 IPR003614 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02050 Vian-Chr1 24669760 24670076 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02050 1 78 Plant Defensins Gene Families AT2G02100 64.103 1.34e-32 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02050 - - gmx:547843 133.265