Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02049 ATGTGGTGTCACCCTCTTCCTCTGTCCAAACCAACACAGAGTGGTTCCCGACAAGTGGTTTTCCCATGGTGCCACGTTTTATGCACGCTTTCTTCTCCCAGGCCTCCTCTTTTGGGCTTGGGCTCGGGCTGGGTTGGGCAGAAAAGAGCACGTGAAGATGACACTGCTGCTGCCGCGAGTGGGGGTGAGGGTGGTTCGCCGTGGGGGAAATGGGCGGCGGAGATTCATGGTCCTCACAAAGTGACGAGAGTGTGGCTTGACACCTTCGACACCGTTGAGGCTGTTGCCAGAGCCTACGATGAGGCCGCATTAAGGTTCAAAGGTAATAGAGCCAAACTCAACTTCCCCGAAAACGTTACCACGGTTCGACCTCCTCACCTTCCCAATTTTTCGGCCACCTCATTCTTGGGCTTCGGTGATGTTCCAGCGGTGACTGGTTATTCTCCGACAGTGATGCAGGGGGCGCCGTTTCAGAGCTCCCATGATTTGCTTAGAGACTATTGGGGATATTCTCAGCTTCTGTGGAGCATAGGGGAGTTCCATGGACTCGATTAG 555 0.5441 MWCHPLPLSKPTQSGSRQVVFPWCHVLCTLSSPRPPLLGLGSGWVGQKRAREDDTAAAASGGEGGSPWGKWAAEIHGPHKVTRVWLDTFDTVEAVARAYDEAALRFKGNRAKLNFPENVTTVRPPHLPNFSATSFLGFGDVPAVTGYSPTVMQGAPFQSSHDLLRDYWGYSQLLWSIGEFHGLD 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02049 184 CDD AP2 67 118 IPR001471 GO:0003700|GO:0006355
Vian1g02049 184 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Vian1g02049 184 PRINTS Ethylene responsive element binding protein signature 98 118 IPR001471 GO:0003700|GO:0006355
Vian1g02049 184 PANTHER DNA-BINDING DOMAIN 67 122 IPR044808 GO:0003700|GO:0009873
Vian1g02049 184 MobiDBLite consensus disorder prediction 49 72 - -
Vian1g02049 184 ProSiteProfiles AP2/ERF domain profile. 58 116 IPR001471 GO:0003700|GO:0006355
Vian1g02049 184 Pfam AP2 domain 68 108 IPR001471 GO:0003700|GO:0006355
Vian1g02049 184 Gene3D AP2/ERF domain 65 118 IPR036955 GO:0003700|GO:0006355
Vian1g02049 184 SMART rav1_2 67 122 IPR001471 GO:0003700|GO:0006355
Vian1g02049 184 SUPERFAMILY DNA-binding domain 66 118 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02049 Vian-Chr1 24662844 24663813 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02049 67 124 AP2-EREBP Transcription Factor Family AT5G64750 75.862 2.16e-25 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian1g02049 AP2 1.4e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02049 - - var:108328161 255.373